Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHT21_RS18205 Genome accession   NZ_CP108054
Coordinates   4034950..4035942 (-) Length   330 a.a.
NCBI ID   WP_328769376.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00286     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4029950..4040942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - rpoS 4034950..4035942 (-) 993 - - Regulator

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37048.86 Da        Isoelectric Point: 4.9712

>NTDB_id=652179 OHT21_RS18205 WP_328769376.1 4034950..4035942(-) (rpoS) [Streptomyces sp. NBC_00286]
MATRAVARHKSASGETDAVRSVRAGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFAQQILDGEVTDAKADAS
REELEALVADAERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAITR
SIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAEIAAELGSNPERVIDVLDWARDPVSLNMSVDDEGETQFGD
LLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKL
ARQTGFDAAA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=652179 OHT21_RS18205 WP_328769376.1 4034950..4035942(-) (rpoS) [Streptomyces sp. NBC_00286]
ATGGCAACCCGTGCCGTCGCCCGTCACAAGTCCGCCTCTGGCGAGACCGACGCGGTACGCAGCGTTCGCGCGGGCGAGAT
CGCCGACCGGGACCTGGTCGGCATGTACCTCGACGAGATAGCGCGTACACCGCTGCTCGACGCCGCCAAGGAAGTCGAGC
TGTCCCAGATCATCGAGGCGGGTGTGTTCGCCCAGCAGATCCTCGACGGTGAGGTGACCGACGCCAAGGCCGACGCCTCC
CGTGAGGAACTGGAAGCGCTGGTGGCCGACGCCGAGCGGGCCAAGGACATCTTCATCCGCTCCAACCTGCGCCTGGTCGT
CGCGGTCGCCCGCCGCTACCCCCGTAGCGGGCTCCCGCTCCTCGACCTGATCCAGGAGGGGAACGCGGGCCTGGTGCGCG
CGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATCACGCGC
TCGATAGCCGACCAGTCGCGCACCATCCGGCTCCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGAGTACAGCG
CGAGTTCAACCGCGAGCACGGCCGGGAGCCGGAGCCCGCGGAGATCGCCGCGGAGCTGGGCTCCAACCCGGAGCGCGTCA
TCGACGTACTTGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGAGGGTGAGACGCAGTTCGGCGAC
CTGCTCGAGGACACCTCGGCGGTCTCGCCCGAGCAGTCCGTACTCACACTGCTGCGCAGCGAGGAGCTCGACGACCTGAT
CGGACGGCTCGACCAGCGCACGGCCTCGATCATCAAGATGCGGTACGGCATCGAGGACGGCCGCGAGCGCACGCTCACCG
AGGTCGGCAAGGAGCACGGCCTCACCCGCGAGCGCATCCGCCAGATCGAGAAGCACGCACTGCTGGAGCTGAAGAAGCTG
GCCCGCCAGACCGGCTTCGACGCGGCGGCGTAA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(31-64)

Sigma-70 region 2 (Sigma70_r2)

(98-167)

Sigma-70 region 3 (Sigma70_r3)

(177-253)

Sigma-70, region 4 (Sigma70_r4)

(267-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

37.5

96.97

0.364