Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OHA05_RS12505 Genome accession   NZ_CP108032
Coordinates   2841703..2843907 (-) Length   734 a.a.
NCBI ID   WP_328860612.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00306     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2836703..2848907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA05_RS12490 (OHA05_12510) - 2837086..2837394 (+) 309 WP_313946239.1 heavy-metal-associated domain-containing protein -
  OHA05_RS12495 (OHA05_12515) - 2837502..2839757 (+) 2256 WP_328860611.1 heavy metal translocating P-type ATPase -
  OHA05_RS12500 (OHA05_12520) - 2840175..2841473 (-) 1299 WP_313946237.1 citrate synthase -
  OHA05_RS12505 (OHA05_12525) recD/recD2/recDB 2841703..2843907 (-) 2205 WP_328860612.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OHA05_RS12510 (OHA05_12530) - 2844329..2844763 (+) 435 WP_328860613.1 hypothetical protein -
  OHA05_RS12515 (OHA05_12535) - 2845057..2845731 (-) 675 WP_328860614.1 hypothetical protein -
  OHA05_RS12520 (OHA05_12540) - 2845728..2846282 (-) 555 WP_328860615.1 SigE family RNA polymerase sigma factor -
  OHA05_RS12525 (OHA05_12545) - 2846374..2846979 (-) 606 WP_313946233.1 hypothetical protein -
  OHA05_RS12530 (OHA05_12550) - 2847096..2847926 (-) 831 WP_328860616.1 sugar phosphate isomerase/epimerase family protein -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 78890.25 Da        Isoelectric Point: 6.8338

>NTDB_id=651747 OHA05_RS12505 WP_328860612.1 2841703..2843907(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00306]
MSNPAVVEGVLERITYANEENGYTVARVDTGRGADLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVENYTTVLPAT
VQGIRRYLGSGLIKGIGPRIAERIVDHFGVETLDIIEREPKKLIEVPGLGPKRTTLIGAAWEEQKAIKEVMIFLQGVGVS
TSIAVRIYKKYGDASISVVKNQPYRLAADVWGIGFLTADKIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPEEQLI
ADAVKLLQVDTGLVIECLAELAADEEGVVRESVPGADGGEAVTAVYLVPFHRAEISLAAQVNRLLRTDEDRMPGFRDVVW
DKALAWLADRTGAALAPEQEAAVRLALTSKVAVLTGGPGCGKSFTVRSVVELARAKKAKVVLAAPTGRAAKRLSELTGAE
ASTVHRLLELRPGGDAAYDRDRPLAADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLADG
GPVPHVRLTRIFRQAQQSGVVTNAHRINSGLPPITSGLSDFFLFVEDETEDAGRVTVDVAARRIPAKFGLDPRRDVQVLA
PMHRGPAGAGTLNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGKNGVFNGTVGVVTSLQPDDQRLTVLTD
EDEEVGYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVSA
GRRFTALDHRLTGG

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=651747 OHA05_RS12505 WP_328860612.1 2841703..2843907(-) (recD/recD2/recDB) [Streptomyces sp. NBC_00306]
ATGTCCAATCCAGCAGTGGTCGAAGGGGTCCTCGAGCGGATCACCTACGCCAACGAGGAGAACGGGTACACGGTCGCCCG
CGTCGACACCGGACGCGGCGCCGATCTCCTCACGGTCGTCGGCTCGCTGCTCGGCGCGCAGCCGGGCGAGTCCCTGCGCA
TGGAGGGCCGCTGGGGCTCCCATCCGCAGTACGGCAAGCAGTTCACCGTGGAGAACTACACCACCGTCCTCCCGGCCACC
GTCCAGGGCATACGCCGTTATCTCGGCTCCGGTCTGATCAAGGGCATCGGCCCGAGGATCGCCGAGCGCATCGTCGACCA
CTTCGGCGTCGAGACCCTCGACATCATCGAGAGGGAGCCGAAGAAACTCATCGAGGTCCCCGGACTCGGCCCGAAGCGGA
CCACGTTGATCGGCGCCGCTTGGGAGGAACAGAAGGCCATCAAGGAGGTCATGATCTTCCTCCAGGGTGTCGGCGTCTCC
ACCTCCATCGCCGTGCGCATCTACAAGAAGTACGGGGACGCCTCGATCTCGGTCGTGAAGAACCAGCCCTACCGCCTCGC
GGCCGACGTGTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAGGCCGTCGGCATACCCCACGACAGTCCGGAGC
GGGTCAAGGCCGGCCTCCAGTACGCCCTGTCCCAGTCGACCGACCAGGGTCACTGCTTCCTGCCCGAGGAGCAGTTGATC
GCGGACGCCGTGAAGCTCCTCCAGGTGGACACCGGCCTGGTCATCGAGTGCCTCGCCGAGCTCGCGGCCGACGAGGAGGG
AGTCGTGCGGGAAAGCGTGCCCGGGGCGGACGGGGGCGAGGCGGTGACCGCCGTCTATCTGGTGCCCTTCCACCGTGCCG
AGATCTCCCTGGCCGCCCAGGTGAACCGGCTGCTGCGCACCGACGAGGACCGGATGCCGGGCTTCCGGGACGTCGTGTGG
GACAAAGCGCTCGCCTGGCTCGCCGACCGCACCGGCGCCGCGCTGGCCCCCGAGCAGGAGGCCGCGGTGCGACTCGCGCT
CACCAGCAAGGTCGCTGTGCTCACCGGTGGCCCCGGCTGCGGAAAGTCCTTCACCGTGCGGTCGGTGGTGGAGCTGGCCC
GCGCCAAGAAGGCGAAGGTGGTGCTGGCCGCCCCCACCGGCCGCGCGGCCAAGCGGCTCTCGGAGCTGACCGGGGCGGAG
GCGTCCACCGTCCACCGGCTGCTGGAACTCAGACCGGGCGGCGACGCGGCATACGACCGGGACCGCCCGCTCGCCGCCGA
TCTGGTCGTCGTGGACGAGGCGTCCATGCTCGATCTGCTGCTGGCCAACAAGCTGGTCAAGGCCGTCGCACCGGGGGCGC
ACCTGCTGCTCGTCGGGGACGTCGACCAGTTGCCGAGCGTGGGCGCGGGCGAGGTGCTGCGGGATCTGCTCGCGGACGGC
GGCCCGGTGCCCCATGTCCGCCTCACCCGGATCTTCCGCCAGGCCCAGCAGTCCGGTGTGGTGACCAACGCCCACCGCAT
CAACTCCGGTCTTCCGCCGATCACTTCGGGACTCTCCGACTTCTTCCTCTTCGTCGAGGACGAGACGGAGGACGCGGGAA
GGGTCACCGTGGACGTGGCGGCCCGTCGGATTCCGGCCAAGTTCGGGCTCGACCCGCGGCGGGATGTGCAGGTTCTGGCG
CCCATGCACCGCGGCCCGGCGGGTGCGGGCACCCTCAACGGTCTGCTGCAACAGGCCATTACGCCCGCCCGGCCGGATCT
CCCCGAGAAGCGTTTCGGCGGACGGGTCTTCCGGGTCGGCGACAAGGTCACCCAGATTCGGAACAATTACGAGAAGGGAA
AGAACGGCGTCTTCAACGGCACGGTCGGCGTGGTCACCTCGCTCCAGCCGGATGATCAGCGGCTGACGGTGCTGACGGAC
GAGGACGAGGAGGTTGGGTACGACTTCGACGAGCTGGACGAGCTGGCCCACGCGTACGCCGTGACCATCCACCGCTCCCA
GGGCAGCGAATACCCGGCGGTGGTGATCCCGGTCACCACCGGAGCATGGATGATGCTTCAGCGGAACCTCCTCTACACGG
CGGTCACCCGGGCCAAGAAGCTCGTCGTGCTCGTCGGCTCCCGCAAGGCGATAGGACAGGCGGTGCGCACCGTTTCCGCA
GGCAGACGCTTCACCGCGCTCGACCACCGGCTGACCGGCGGCTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(657-705)

Helix-hairpin-helix containing domain (HHH_RecD2)

(143-233)

Helix-hairpin-helix domain (HHH_5)

(93-133)

AAA domain (AAA_30)

(335-513)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-637)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.471

100

0.369