Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG878_RS26885 Genome accession   NZ_CP108023
Coordinates   6062634..6064367 (-) Length   577 a.a.
NCBI ID   WP_328889156.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00316     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6057634..6069367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG878_RS26875 (OG878_26925) - 6059559..6060692 (+) 1134 WP_328891391.1 RNA polymerase sigma factor -
  OG878_RS26880 (OG878_26930) - 6060709..6062634 (-) 1926 WP_328889155.1 ABC transporter ATP-binding protein -
  OG878_RS26885 (OG878_26935) rcrP 6062634..6064367 (-) 1734 WP_328889156.1 ABC transporter ATP-binding protein Regulator
  OG878_RS26890 (OG878_26940) - 6064517..6065962 (-) 1446 WP_328889157.1 FGGY family carbohydrate kinase -
  OG878_RS26895 (OG878_26945) - 6066023..6066322 (-) 300 WP_328891392.1 YtxH domain-containing protein -
  OG878_RS26915 (OG878_26965) - 6067621..6067815 (+) 195 WP_328889158.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62702.71 Da        Isoelectric Point: 5.2476

>NTDB_id=651610 OG878_RS26885 WP_328889156.1 6062634..6064367(-) (rcrP) [Streptomyces sp. NBC_00316]
MLIKLLRAYLGPYKKPIVLLVALQLLQTCATLYLPSLNADIIDNGVVEGDTGYILEYGGIMIAVSIAQVVCNMGAVFYGA
RTAAALGRDVRASVFDRVQSFSAREIGRFGAPTLITRTTNDVQQIQMLVLMTFTMMVSAPIMCVGGIILALGQDVPLSAV
LLAVVPVLGIAVSLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEKRFHGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVAPVRELRAHGHLEVRGADFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEELEHGLHAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALAQETAESTVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=651610 OG878_RS26885 WP_328889156.1 6062634..6064367(-) (rcrP) [Streptomyces sp. NBC_00316]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGTCCGTACAAGAAACCGATCGTGCTGCTGGTGGCGCTCCAGCTGCTGCA
GACCTGCGCCACCCTCTATCTCCCCTCCTTGAACGCCGACATCATTGACAACGGTGTCGTCGAGGGGGACACGGGCTACA
TCCTGGAGTACGGCGGCATCATGATCGCCGTCTCCATCGCCCAGGTCGTCTGCAACATGGGGGCCGTCTTCTACGGCGCA
CGCACCGCCGCCGCCCTGGGCCGCGACGTCCGGGCGTCGGTCTTCGACCGGGTGCAGTCGTTCTCGGCACGCGAGATCGG
GCGCTTCGGCGCACCGACGCTGATCACCCGTACGACCAATGACGTCCAGCAGATCCAGATGCTGGTTTTGATGACGTTCA
CCATGATGGTCTCGGCGCCGATCATGTGTGTCGGCGGCATCATCCTGGCGCTCGGCCAGGACGTTCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTGCTCGGCATCGCGGTGAGCCTCATCGTGAGGAGGATGCGGCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGCGACG
GGTACGAGGAGAAGCGGTTCCACGGCGCCAACACCGAGTTGACCGATGTGGCGCTCTCCACCGGGCGCCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTGGTCTGGTTCGGAGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCGTTCCTCTCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCGACCTTCA
TGTTCATGATGGTGCCGCGTGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGATTCGAGCGTGGTGCCG
CCGGTCGCACCGGTGCGGGAGCTGCGCGCCCACGGTCATCTGGAGGTGCGGGGTGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGGTCGGTGGATCTGGTGGCGCGGCCCGGCGAGACGACGGCGATCATCGGGTCGACAGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTGCCGCGGCTCTTCGACGTGACCGACGGCCAGGTGCTGGTCGACGGCACGGACGTGCGG
ACGCTGGAGCCGGCATTGCTGGCGAAGACGGTGAGCCTGGTTCCGCAGAAGCCCTATCTGTTCTCCGGGACGGTCGCGAC
GAACCTGCGGTACGGGAACCCGGACGCGACCGACGAGGAGCTCTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGGAGCTGGAGCACGGCCTGCACGCACCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGACAGCGGCAGCGCCTC
GCGATCGCGAGGACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACGGA
TGCCGCACTGCGCGGGGCGCTGGCGCAGGAGACGGCCGAGTCGACCGTGGTGATAGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTCGACGAGGGGCGGGTCGTCGGATCCGGCACCCATCACGAGCTGATGGACGGCAAC
GAAACATACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.084

99.133

0.407