Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   L2I54_RS19420 Genome accession   NZ_CP091476
Coordinates   3823634..3824413 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain GSICC 30237     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3818634..3829413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2I54_RS19395 (L2I54_19335) uppS 3819383..3820159 (-) 777 WP_061457651.1 isoprenyl transferase -
  L2I54_RS19400 (L2I54_19340) frr 3820245..3820802 (-) 558 WP_000531501.1 ribosome recycling factor -
  L2I54_RS19405 (L2I54_19345) pyrH 3820805..3821527 (-) 723 WP_000042668.1 UMP kinase -
  L2I54_RS19410 (L2I54_19350) tsf 3821594..3822481 (-) 888 WP_001018578.1 translation elongation factor Ts -
  L2I54_RS19415 (L2I54_19355) rpsB 3822585..3823286 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  L2I54_RS19420 (L2I54_19360) codY 3823634..3824413 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  L2I54_RS19425 (L2I54_19365) hslU 3824491..3825882 (-) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  L2I54_RS19430 (L2I54_19370) hslV 3825905..3826447 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  L2I54_RS19435 (L2I54_19375) xerC 3826490..3827389 (-) 900 WP_001101243.1 tyrosine recombinase XerC -
  L2I54_RS19440 (L2I54_19380) trmFO 3827455..3828759 (-) 1305 WP_061457652.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=651595 L2I54_RS19420 WP_000421290.1 3823634..3824413(-) (codY) [Bacillus cereus strain GSICC 30237]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=651595 L2I54_RS19420 WP_000421290.1 3823634..3824413(-) (codY) [Bacillus cereus strain GSICC 30237]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459