Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OG878_RS12350 Genome accession   NZ_CP108023
Coordinates   2807844..2809469 (-) Length   541 a.a.
NCBI ID   WP_328886843.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00316     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2802844..2814469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG878_RS12325 (OG878_12350) rpsB 2802905..2803816 (-) 912 WP_328886842.1 30S ribosomal protein S2 -
  OG878_RS12330 (OG878_12355) - 2804242..2804688 (+) 447 Protein_2455 M23 family metallopeptidase -
  OG878_RS12335 (OG878_12360) - 2804766..2805323 (-) 558 WP_328891218.1 helix-turn-helix domain-containing protein -
  OG878_RS12340 (OG878_12365) whiG 2805417..2806253 (-) 837 WP_277328606.1 RNA polymerase sigma factor WhiG -
  OG878_RS12345 (OG878_12370) dprA 2806495..2807649 (-) 1155 WP_328891219.1 DNA-processing protein DprA -
  OG878_RS12350 (OG878_12375) comM 2807844..2809469 (-) 1626 WP_328886843.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OG878_RS12355 (OG878_12380) - 2809469..2809828 (-) 360 WP_328886844.1 YraN family protein -
  OG878_RS12360 (OG878_12385) - 2810030..2810338 (-) 309 WP_008745401.1 DUF2469 domain-containing protein -
  OG878_RS12365 (OG878_12390) - 2810403..2810891 (-) 489 WP_328886845.1 NUDIX hydrolase -
  OG878_RS12370 (OG878_12395) lepB 2810881..2811630 (-) 750 WP_328886846.1 signal peptidase I -
  OG878_RS12375 (OG878_12400) lepB 2811680..2812576 (-) 897 WP_328891220.1 signal peptidase I -
  OG878_RS12380 (OG878_12405) lepB 2812527..2813552 (-) 1026 WP_328886847.1 signal peptidase I -
  OG878_RS12385 (OG878_12410) lepB 2813545..2814312 (-) 768 WP_328886848.1 signal peptidase I -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 56033.44 Da        Isoelectric Point: 7.0013

>NTDB_id=651576 OG878_RS12350 WP_328886843.1 2807844..2809469(-) (comM) [Streptomyces sp. NBC_00316]
MGFARACSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLVESRDRVRAAVVNSGAEWPQKKLTVGLSPASVPKGGSG
FDLAVACAVLGAAERIDPAAIADVVMIGELGLDGRVRPVRGVLPAVLAAAEAGYGKVVVPEQTAGEAALVPGVSVLGVRS
LRQLIAVLSDEPVPDEPQSHEEGRPDTMLAGLMVPGTGIGTGLAMGSAQGEGNRPDLADVAGQELPRKALEVAAAGAHHL
LLSGPPGAGKTMLAERLSAILPTLTRQESLEVTAVHSVAGILPPGEPLVSRAPYCAPHHSATMQSLIGGGNGMPRPGAVS
LAHRGVLFLDEAPEFSVRALDALRQPLESGHVVVARSAGVVRLPARFLMVLAANPCPCGRHTLNGAGCECPPSSVRRYQA
RLSGPLLDRVDLRVRVAPVTRADLMGRGGRGESTDDVAARVRAARRRAADRLAGTPWTTNSEVPGHELRTRLLTAPGALL
EAERDMERGLLTARGLDRVLRVAWTLADLRGSDRPEAADMAVALELRTGIPRGAAVPEWAS

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=651576 OG878_RS12350 WP_328886843.1 2807844..2809469(-) (comM) [Streptomyces sp. NBC_00316]
ATGGGGTTCGCGCGGGCGTGCTCGGTGGCGCTGGTCGGCGTCGAAGGCGTGGTGGTGGAGGTCCAGGCGGATCTGGAGCC
GGGGGTGGCGGCGTTCACCCTGGTCGGGCTGCCGGACAAGAGCCTGGTGGAGAGCCGGGACCGGGTCAGGGCCGCGGTGG
TCAACTCCGGCGCCGAGTGGCCGCAGAAGAAACTCACGGTCGGGCTCTCCCCCGCCTCCGTGCCCAAGGGCGGGTCGGGC
TTCGATCTCGCCGTCGCCTGCGCGGTGCTGGGCGCGGCGGAGCGGATCGACCCCGCGGCCATCGCCGACGTGGTGATGAT
CGGCGAACTCGGGCTCGACGGCCGGGTGCGGCCGGTGCGCGGGGTGCTGCCGGCCGTACTGGCCGCGGCGGAGGCGGGAT
ACGGCAAGGTCGTCGTCCCCGAACAGACCGCGGGCGAGGCGGCGCTGGTGCCCGGGGTGTCGGTCCTGGGGGTACGGAGC
CTTCGGCAGCTGATCGCCGTGCTCAGCGACGAGCCGGTGCCGGACGAGCCGCAGAGCCACGAGGAAGGGCGCCCCGACAC
CATGCTCGCCGGGCTGATGGTGCCGGGCACGGGCATCGGCACAGGACTGGCGATGGGATCCGCGCAGGGCGAAGGGAACC
GTCCGGACCTGGCGGACGTGGCAGGCCAGGAGCTGCCGCGCAAAGCCCTGGAGGTCGCTGCGGCGGGAGCCCACCACCTG
CTGCTCTCCGGGCCACCCGGCGCGGGCAAGACCATGCTGGCCGAGCGGCTGTCCGCGATCCTGCCCACGCTGACCAGGCA
GGAATCCCTCGAAGTGACCGCGGTGCATTCGGTGGCGGGCATTCTGCCGCCGGGCGAGCCGCTCGTCTCCCGGGCGCCGT
ACTGCGCACCGCACCACTCGGCGACGATGCAGTCGCTGATCGGCGGGGGCAACGGAATGCCGCGGCCCGGTGCGGTCTCG
CTGGCCCATCGGGGCGTGCTGTTCCTTGACGAGGCCCCCGAGTTCTCCGTGCGGGCCCTGGACGCGCTGCGCCAGCCGCT
GGAGTCGGGACACGTGGTGGTGGCGCGCAGCGCCGGGGTGGTGCGGCTGCCCGCACGGTTCCTGATGGTGCTCGCCGCCA
ACCCGTGTCCGTGCGGCCGCCACACGCTCAACGGCGCGGGCTGCGAGTGCCCGCCCTCGTCGGTCCGCCGCTACCAGGCG
AGACTCTCCGGGCCTCTGCTGGACCGGGTGGATCTGCGCGTGCGCGTCGCTCCGGTGACGCGTGCGGACCTGATGGGGCG
GGGAGGCAGGGGAGAGTCGACCGACGACGTCGCCGCCCGGGTGCGGGCGGCCAGGAGGCGGGCCGCGGACCGGCTCGCGG
GCACGCCCTGGACCACCAACAGCGAAGTACCCGGCCATGAGCTGCGCACCCGGCTGCTCACGGCGCCGGGTGCGCTCCTG
GAGGCCGAACGGGACATGGAGCGGGGACTGCTCACCGCGCGGGGACTCGACCGGGTCCTGCGGGTGGCCTGGACCCTCGC
CGATCTCCGCGGATCAGACCGCCCGGAGGCGGCCGACATGGCGGTGGCCCTGGAGCTCCGGACGGGAATCCCGCGCGGTG
CCGCGGTGCCGGAGTGGGCCTCATGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(216-422)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(431-527)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

39.887

97.782

0.39
  comM Vibrio cholerae strain A1552

39.887

97.782

0.39
  comM Vibrio campbellii strain DS40M4

38.649

98.521

0.381
  comM Acinetobacter baylyi ADP1

37.311

97.597

0.364
  comM Haemophilus influenzae Rd KW20

37.192

97.412

0.362
  comM Glaesserella parasuis strain SC1401

36.773

98.521

0.362