Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   L3V65_RS08965 Genome accession   NZ_CP091468
Coordinates   1810038..1812401 (-) Length   787 a.a.
NCBI ID   WP_237348248.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain 19-1-JSRL-34-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1805038..1817401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V65_RS08940 (L3V65_08940) - 1805381..1806031 (-) 651 WP_237348246.1 HlyD family efflux transporter periplasmic adaptor subunit -
  L3V65_RS08945 (L3V65_08945) - 1806039..1806479 (-) 441 WP_237348247.1 MarR family winged helix-turn-helix transcriptional regulator -
  L3V65_RS08950 (L3V65_08950) dtd 1806661..1807101 (-) 441 WP_029141948.1 D-aminoacyl-tRNA deacylase -
  L3V65_RS08955 (L3V65_08955) - 1807115..1809304 (-) 2190 WP_019720840.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  L3V65_RS08960 (L3V65_08960) - 1809526..1810047 (-) 522 WP_013859780.1 adenine phosphoribosyltransferase -
  L3V65_RS08965 (L3V65_08965) recJ 1810038..1812401 (-) 2364 WP_237348248.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  L3V65_RS08970 (L3V65_08970) secDF 1812490..1814754 (-) 2265 WP_237348249.1 protein translocase subunit SecDF -
  L3V65_RS08975 (L3V65_08975) - 1814900..1815220 (-) 321 WP_237348250.1 post-transcriptional regulator -
  L3V65_RS08980 (L3V65_08980) spoVB 1815323..1816867 (+) 1545 WP_237348251.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 87751.70 Da        Isoelectric Point: 5.7528

>NTDB_id=651527 L3V65_RS08965 WP_237348248.1 1810038..1812401(-) (recJ) [Heyndrickxia coagulans strain 19-1-JSRL-34-1]
MLQSRTRWRVPETDPEAAATISQQLNVSPLVSKLLVNRGITDVEEARSFLFHEGAEYHDPFLLHDMEKAAARIREAIKRE
EPVLVFGDYDADGVTSTAIMMAVLNDLGARAEFYIPDRFKEGYGPNEAAFRRAAEEGFQLIITVDTGIAAVHEAEVAREL
GIPLIITDHHEPGPVLPEAFAIVHPKHPESTYPFRELSGAGVAFKVAHALYGKVPEQLEELAAIGTVADLVPLLDENRLI
AANGIKRLRTTKRPGLAALCRCADIRQEEINEETIGFVLAPRLNAAGRLQHAAPAAELLMTENAEEAGMLAETIDGLNKE
RQKIVNEMTNEAIEMVEEEVEKGARVLVVGKEGWNAGVIGIAASRLTERFYRPAIVLSFDPETGLAKGSARSIDGFHMFN
ELSKCRDILPHFGGHPMAAGMTLSLSDVDELRRRLNEQAAALPDEMFVPVTNISAEISIEEAGMEAIREMALLSPFGTAN
PKPLLLLDGAYCPQIRAIGADGKHLKLALSKNGTTLDGVGFGLGNLAPQISPSACISVVGELSINEWNNIRKPQMMVKDI
KITNWQLFDFRGNRPLKQWVGHVPEDGQAFVVFQKETLRKLPLPDFSVRLVPVATMEEARAFDPANKNIVFLDLPPGPKM
MAALLEGGAPARIYAYFYHAGNHFFSTFPTREHFKWFYAFLAKRKTFNLKRHGDELAAYRGWSRNTIDFISQVFFELDFV
TIKDGFISLKAAKQKRDLKESFTYQKKLAQYQIEKDLLYSSFHELKMWFDQMIKPAVQYEEETAKWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=651527 L3V65_RS08965 WP_237348248.1 1810038..1812401(-) (recJ) [Heyndrickxia coagulans strain 19-1-JSRL-34-1]
ATGCTGCAGTCAAGAACAAGGTGGCGGGTGCCGGAAACCGATCCGGAGGCAGCCGCAACGATCTCGCAACAATTGAACGT
TTCGCCACTTGTTTCAAAATTGCTTGTAAACCGCGGCATAACGGATGTTGAAGAAGCGCGGTCTTTTTTATTCCATGAAG
GGGCAGAATACCATGATCCGTTTTTGCTGCATGATATGGAAAAAGCAGCCGCCCGTATCCGCGAAGCGATTAAAAGGGAA
GAGCCGGTTCTCGTCTTCGGCGATTACGATGCGGACGGCGTAACGAGCACCGCGATCATGATGGCCGTTTTAAACGATCT
TGGCGCCCGTGCGGAATTTTATATCCCGGACCGGTTTAAAGAAGGGTACGGGCCAAATGAGGCGGCTTTCCGGCGGGCGG
CTGAAGAAGGATTCCAGCTGATCATTACCGTGGACACCGGTATTGCCGCTGTCCACGAAGCGGAAGTGGCCCGCGAACTG
GGGATCCCGCTCATTATTACGGACCATCACGAACCCGGGCCGGTGTTGCCGGAAGCTTTTGCCATCGTCCATCCGAAGCA
TCCGGAAAGTACATACCCGTTCCGGGAACTGTCGGGCGCAGGCGTCGCTTTTAAAGTCGCCCATGCGCTGTACGGCAAAG
TTCCGGAACAACTTGAAGAACTGGCCGCTATCGGGACGGTCGCGGATCTTGTGCCGCTATTGGATGAAAACCGGCTGATT
GCCGCAAACGGCATCAAACGGCTGAGAACAACAAAGCGGCCGGGGCTTGCGGCGCTGTGCCGGTGTGCGGATATCCGCCA
GGAAGAGATTAACGAAGAAACAATCGGCTTTGTGCTCGCCCCCCGCTTAAATGCGGCCGGGCGCCTGCAACATGCGGCAC
CGGCAGCAGAACTGCTGATGACCGAAAACGCAGAAGAAGCCGGGATGCTCGCTGAAACGATTGACGGGCTCAATAAAGAA
CGGCAAAAAATCGTAAACGAGATGACAAATGAAGCAATCGAAATGGTGGAAGAAGAAGTGGAAAAGGGGGCGCGTGTCCT
TGTTGTCGGGAAAGAAGGATGGAATGCCGGCGTAATCGGCATTGCCGCCTCGCGCCTTACAGAACGCTTTTACCGGCCTG
CGATTGTGCTCAGCTTTGATCCGGAAACAGGGCTGGCAAAAGGATCGGCGCGCAGTATTGACGGCTTCCATATGTTTAAC
GAATTATCGAAATGCAGGGATATTTTGCCGCATTTTGGCGGGCATCCGATGGCGGCGGGGATGACGCTTTCTTTATCCGA
TGTGGATGAACTGCGGCGCCGGCTGAACGAACAGGCCGCGGCATTGCCGGATGAGATGTTTGTGCCGGTTACGAACATCA
GCGCTGAAATTTCCATAGAAGAAGCCGGGATGGAAGCGATCCGCGAAATGGCATTGCTCTCGCCGTTTGGCACGGCGAAT
CCGAAGCCGCTTCTGTTGCTGGATGGGGCCTATTGCCCGCAAATCCGGGCGATCGGCGCAGACGGGAAACATTTGAAATT
GGCGCTTTCCAAAAACGGCACAACGCTCGATGGAGTCGGCTTCGGGCTCGGAAATCTTGCCCCGCAGATTTCCCCTTCTG
CCTGCATATCGGTTGTCGGGGAACTGTCCATCAATGAATGGAATAATATCCGCAAGCCGCAAATGATGGTAAAGGACATC
AAGATCACAAACTGGCAATTGTTTGATTTCAGGGGCAACAGGCCTTTAAAGCAATGGGTCGGGCACGTCCCGGAAGATGG
CCAGGCTTTTGTTGTGTTCCAAAAAGAAACATTACGGAAACTGCCGCTGCCGGATTTTTCCGTCCGCCTTGTGCCGGTGG
CGACAATGGAAGAGGCAAGGGCATTTGACCCGGCAAATAAAAATATTGTGTTTCTTGATCTTCCGCCAGGCCCGAAGATG
ATGGCGGCACTGCTTGAAGGCGGTGCGCCGGCCAGGATTTATGCGTATTTTTACCATGCCGGGAACCACTTTTTCAGCAC
GTTTCCGACGCGCGAACATTTTAAATGGTTTTACGCTTTTCTTGCAAAAAGGAAAACGTTCAACCTGAAGCGGCACGGGG
ATGAGCTGGCGGCTTACCGCGGCTGGTCGAGAAATACGATCGATTTTATTTCGCAGGTGTTTTTTGAACTTGATTTTGTT
ACAATAAAGGATGGATTTATTTCCCTAAAAGCAGCCAAACAAAAACGCGATTTAAAGGAATCTTTTACGTATCAGAAAAA
ACTGGCACAATATCAAATAGAAAAGGACCTGCTGTACTCATCTTTCCATGAGCTGAAGATGTGGTTTGACCAAATGATCA
AGCCTGCTGTACAGTATGAGGAGGAAACAGCAAAATGGATTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

RecJ OB domain (RecJ_OB)

(454-559)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.113

100

0.531