Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   L3V65_RS08865 Genome accession   NZ_CP091468
Coordinates   1787070..1789493 (-) Length   807 a.a.
NCBI ID   WP_061566159.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain 19-1-JSRL-34-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1782070..1794493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V65_RS08845 (L3V65_08845) - 1784599..1785690 (-) 1092 WP_237348240.1 AI-2E family transporter -
  L3V65_RS08850 (L3V65_08850) - 1785929..1786069 (-) 141 WP_237348241.1 YrzQ family protein -
  L3V65_RS08855 (L3V65_08855) - 1786078..1786290 (-) 213 WP_013859758.1 hypothetical protein -
  L3V65_RS08860 (L3V65_08860) - 1786450..1786890 (+) 441 WP_013859759.1 YndM family protein -
  L3V65_RS08865 (L3V65_08865) recD2 1787070..1789493 (-) 2424 WP_061566159.1 ATP-dependent RecD-like DNA helicase Machinery gene
  L3V65_RS08870 (L3V65_08870) - 1789504..1790172 (-) 669 WP_013859761.1 tetratricopeptide repeat protein -
  L3V65_RS08875 (L3V65_08875) mnmA 1790550..1791665 (-) 1116 WP_013859762.1 tRNA 2-thiouridine(34) synthase MnmA -
  L3V65_RS08880 (L3V65_08880) - 1791681..1792826 (-) 1146 WP_207368128.1 cysteine desulfurase family protein -
  L3V65_RS08885 (L3V65_08885) - 1792847..1793266 (-) 420 WP_013859764.1 Rrf2 family transcriptional regulator -
  L3V65_RS08890 (L3V65_08890) - 1793648..1794391 (-) 744 WP_017552631.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 807 a.a.        Molecular weight: 90678.77 Da        Isoelectric Point: 4.8244

>NTDB_id=651526 L3V65_RS08865 WP_061566159.1 1787070..1789493(-) (recD2) [Heyndrickxia coagulans strain 19-1-JSRL-34-1]
MEKQHAMDLFQDQENFIKGKHLATIFHNEQNLYSVIRVRVEETNTGMEEKETVITGYFPRIHEQETYTFFGKMQEHPKFG
PQFQANRFQKDIPNTKQGVVEYLSSDLFNGIGKKTAERIVGVLGENAISKILENPAALDEVPKLAPEKAQLIHDTLVEHQ
GLERVMIGLAQYGFGPQIAMRIYQVYEDEALEMIAQNPYRLVDDIKGIGFGRADELGRQLGISGTHPHRIQAGCCYMLEM
ESMQHGHVYVLKEELAQDVKALLEEYQNVEIPVGLIENELVKLQEESKVIMEEDKVYLPSLYFSEKGIVSNIERIMSQTE
YAEQFPESEFLLALGSLEERLGVEYAPSQKEAIQKALMSPMMILTGGPGTGKTTVIKGIVELYGELHGVSLDPQTYKKDE
AFPIVLAAPTGRAAKRMAESTGLPAMTIHRLLGMTGMEDLDDSEERQVEGKLVIIDEMSMVDTWLANQLLKALPDEIQVI
MVGDEDQLPSVGPGQVLKDLLKSGAIPVVRLTDIYRQKDGSSIIELAHHVKNGRIPENIFQMQADRSFIRCSSGQVAEAV
EKVVKSAKRKGYTAKDIQVLAPMYRGPAGIDRLNSLLQNIFNPNENGARKELKHGDAVYRIGDKVLQLVNQPEHGVYNGD
IGEIVSLFTAKENTEKQDMLIVSFDGIEVTYTKPDFNQITLAYCCSIHKSQGSEFPVVILPVVRSYYRMLRRNLLYTAIT
RSKKILILLGEEPAFRMGVEREDDQKRKTTLCEKLAEALKTEQIEAGTETLLSLTEENWDQVDPMIGMEGITPYTFAEEK
QTAPQAD

Nucleotide


Download         Length: 2424 bp        

>NTDB_id=651526 L3V65_RS08865 WP_061566159.1 1787070..1789493(-) (recD2) [Heyndrickxia coagulans strain 19-1-JSRL-34-1]
TTGGAAAAACAGCATGCGATGGATTTATTCCAGGACCAGGAAAATTTTATAAAAGGAAAGCATCTCGCGACCATTTTCCA
TAACGAGCAAAATTTGTATTCCGTCATCCGTGTGCGGGTTGAAGAGACCAATACCGGGATGGAAGAAAAGGAAACGGTCA
TTACCGGCTATTTTCCGCGCATCCATGAGCAGGAAACGTACACCTTTTTTGGAAAAATGCAGGAACACCCGAAATTCGGC
CCCCAATTCCAGGCAAACCGCTTTCAGAAGGACATTCCCAATACAAAGCAGGGTGTTGTTGAGTATCTTTCCAGTGATTT
ATTCAACGGCATCGGCAAAAAAACGGCGGAGCGGATCGTTGGCGTGCTCGGTGAAAATGCGATCAGCAAAATATTGGAAA
ATCCCGCCGCCCTTGACGAAGTACCAAAACTGGCGCCGGAAAAAGCACAGCTGATCCATGATACGTTGGTTGAACACCAG
GGGCTTGAACGTGTCATGATCGGGCTTGCGCAATACGGTTTCGGGCCGCAGATTGCGATGCGCATTTACCAGGTTTACGA
GGATGAGGCGCTCGAAATGATCGCACAAAATCCGTACCGGCTCGTCGATGATATCAAAGGCATCGGTTTCGGGCGGGCCG
ATGAACTCGGCCGGCAGCTCGGCATCAGCGGGACGCATCCGCACCGTATCCAGGCCGGCTGCTGTTACATGCTGGAAATG
GAAAGCATGCAGCATGGCCATGTGTACGTCCTGAAAGAAGAACTTGCGCAGGATGTCAAGGCCCTTTTGGAAGAGTACCA
GAATGTTGAAATCCCGGTCGGCCTGATTGAAAATGAGCTGGTAAAACTGCAGGAAGAGAGCAAAGTGATCATGGAAGAAG
ACAAAGTCTATCTTCCGTCCCTCTATTTTTCGGAAAAAGGAATCGTTTCCAATATTGAGCGGATAATGTCGCAAACCGAG
TATGCGGAACAGTTCCCGGAGTCGGAATTCCTGCTTGCCCTGGGCAGCCTTGAAGAACGGCTCGGCGTCGAGTATGCCCC
GTCGCAAAAGGAAGCCATCCAAAAAGCGCTGATGAGCCCGATGATGATTTTAACGGGCGGACCCGGCACAGGGAAAACAA
CGGTCATTAAAGGGATTGTGGAACTGTACGGCGAATTGCACGGCGTTTCGCTTGACCCGCAAACCTATAAAAAAGATGAG
GCATTTCCGATTGTCCTCGCGGCGCCGACAGGGAGGGCCGCGAAAAGAATGGCGGAATCAACCGGTCTGCCGGCGATGAC
GATCCACCGCCTGCTCGGCATGACCGGCATGGAGGACCTGGACGATTCAGAGGAACGGCAAGTAGAAGGCAAGCTCGTCA
TCATTGATGAAATGTCGATGGTCGATACATGGCTTGCGAACCAGCTGTTAAAGGCGCTGCCGGATGAAATCCAGGTCATT
ATGGTCGGAGATGAAGACCAGCTGCCGTCCGTCGGTCCAGGCCAGGTGCTGAAAGATTTATTGAAATCGGGCGCCATCCC
GGTTGTCAGGCTGACAGACATATACAGGCAGAAAGATGGTTCTTCGATTATTGAACTGGCCCACCATGTCAAAAATGGGC
GTATTCCGGAAAATATTTTTCAAATGCAGGCAGACCGTTCGTTTATCCGCTGTTCTTCCGGCCAGGTGGCGGAAGCGGTG
GAAAAAGTGGTGAAAAGCGCGAAACGGAAAGGCTATACGGCAAAAGACATCCAGGTGCTGGCGCCGATGTACAGGGGGCC
GGCCGGCATTGACCGCCTGAACAGCCTTTTGCAAAATATTTTTAATCCGAATGAGAACGGCGCCCGCAAAGAGCTGAAGC
ACGGGGACGCGGTTTACCGGATCGGCGATAAGGTGCTGCAGCTTGTCAACCAGCCGGAACACGGAGTGTATAACGGCGAT
ATCGGCGAGATTGTCTCCCTTTTTACCGCAAAAGAAAATACGGAAAAACAAGATATGCTCATCGTTTCTTTTGACGGGAT
TGAAGTGACGTATACGAAGCCTGATTTCAACCAGATTACGCTTGCGTATTGCTGTTCGATCCATAAATCGCAAGGAAGCG
AGTTCCCGGTAGTGATTTTGCCGGTTGTCCGCAGCTATTACCGGATGCTGCGCCGAAACTTGCTGTATACTGCGATCACA
AGAAGCAAAAAAATTTTAATTCTGCTTGGCGAAGAACCGGCTTTCCGGATGGGTGTGGAAAGGGAAGATGACCAAAAACG
GAAGACGACACTGTGTGAAAAACTGGCTGAAGCATTAAAAACGGAACAAATAGAGGCAGGGACGGAGACACTCCTGTCCC
TGACAGAAGAAAATTGGGACCAGGTCGACCCGATGATTGGCATGGAGGGCATTACCCCGTACACTTTCGCGGAAGAAAAG
CAAACGGCTCCCCAAGCGGATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-553)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-728)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.549

99.257

0.601