Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   L3475_RS08990 Genome accession   NZ_CP091451
Coordinates   1743469..1744290 (-) Length   273 a.a.
NCBI ID   WP_263275207.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 3238/09     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 1738469..1749290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3475_RS08945 (L3475_08880) - 1738961..1739278 (-) 318 WP_000615767.1 thioredoxin family protein -
  L3475_RS08950 (L3475_08885) - 1739275..1739574 (-) 300 WP_001815024.1 DUF4651 domain-containing protein -
  L3475_RS08955 - 1739668..1739799 (+) 132 WP_001811306.1 hypothetical protein -
  L3475_RS08960 - 1739824..1740021 (-) 198 Protein_1755 N-acetylmuramoyl-L-alanine amidase family protein -
  L3475_RS08965 (L3475_08895) - 1740264..1740938 (-) 675 WP_000725707.1 LiaF transmembrane domain-containing protein -
  L3475_RS08970 (L3475_08900) - 1740943..1741389 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  L3475_RS08975 (L3475_08905) - 1741503..1742006 (-) 504 WP_000800942.1 phosphatase PAP2 family protein -
  L3475_RS08980 (L3475_08910) - 1742003..1742365 (-) 363 WP_000078804.1 DUF2200 domain-containing protein -
  L3475_RS08985 (L3475_08915) - 1742431..1743276 (-) 846 Protein_1760 ATP-binding cassette domain-containing protein -
  L3475_RS08990 (L3475_08920) rcrP 1743469..1744290 (-) 822 WP_263275207.1 ABC transporter permease Regulator
  L3475_RS08995 (L3475_08925) - 1744307..1744778 (-) 472 Protein_1762 MarR family winged helix-turn-helix transcriptional regulator -
  L3475_RS09000 (L3475_08930) - 1744902..1745618 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  L3475_RS09005 (L3475_08935) ply 1746499..1747914 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  L3475_RS09010 (L3475_08940) - 1747925..1748335 (-) 411 WP_000595763.1 hypothetical protein -
  L3475_RS09015 (L3475_08945) - 1748328..1748936 (-) 609 WP_000083614.1 hypothetical protein -

Sequence


Protein


Download         Length: 273 a.a.        Molecular weight: 30664.40 Da        Isoelectric Point: 5.9310

>NTDB_id=651344 L3475_RS08990 WP_263275207.1 1743469..1744290(-) (rcrP) [Streptococcus pneumoniae strain 3238/09]
MILLAILFTCFLVYLELEVPTYISKITDLLGSQETNLDELWQPASMMMGMSFLAFLSVVAVGFFASRVAASYISRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTINDITQVQMLITMGLQVVTRGPIMAIWAIGKILGHSEYWLWAVLVVVIVNVLMTTV
LMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIIFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=651344 L3475_RS08990 WP_263275207.1 1743469..1744290(-) (rcrP) [Streptococcus pneumoniae strain 3238/09]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTTGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGAAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGTCCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATATTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTATCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGCGTGGTCCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGTAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGTTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTA
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTAT
TTTCATGTCTTATGCCATGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.491

100

0.59