Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA37_RS02610 Genome accession   NZ_CP108006
Coordinates   577786..578466 (+) Length   226 a.a.
NCBI ID   WP_266883770.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00335     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 572786..583466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA37_RS02590 (OHA37_02590) - 573092..574042 (-) 951 WP_266901993.1 AEC family transporter -
  OHA37_RS02595 (OHA37_02595) - 574229..575266 (+) 1038 WP_266901995.1 NADP-dependent oxidoreductase -
  OHA37_RS02600 (OHA37_02600) - 575380..575835 (+) 456 WP_266901997.1 MerR family transcriptional regulator -
  OHA37_RS02605 (OHA37_02605) - 576551..577789 (+) 1239 WP_266901999.1 histidine kinase -
  OHA37_RS02610 (OHA37_02610) vraR 577786..578466 (+) 681 WP_266883770.1 response regulator transcription factor Regulator
  OHA37_RS02615 (OHA37_02615) - 578604..579647 (+) 1044 WP_266902001.1 alpha/beta hydrolase -
  OHA37_RS02620 (OHA37_02620) - 579644..580864 (+) 1221 WP_266902003.1 acyltransferase -
  OHA37_RS02625 (OHA37_02625) - 581007..581429 (-) 423 WP_266902005.1 DUF350 domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24331.13 Da        Isoelectric Point: 5.3603

>NTDB_id=651211 OHA37_RS02610 WP_266883770.1 577786..578466(+) (vraR) [Streptomyces sp. NBC_00335]
MTIRVIIVDDQAMVRAGFAALLSAQADIDVVGEAPDGRQGIQVSRTVHPDVVLMDVRMPEMDGLSAARELLDPPPGVVHR
PKVLMLTTFDIDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGEALLAPSVTRRLIADFVERRPAPRRDPALRLNGL
TPRETEVLELIARGLSNQEIAGHLVVAEQTVKTHIGRVLGKLDLRDRAQAVIFAYEAGLVRPGDGG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=651211 OHA37_RS02610 WP_266883770.1 577786..578466(+) (vraR) [Streptomyces sp. NBC_00335]
TTGACCATCCGCGTGATCATCGTCGACGACCAGGCCATGGTGCGGGCGGGTTTCGCCGCGCTGTTGTCGGCGCAGGCCGA
CATCGACGTCGTGGGTGAGGCGCCCGACGGACGCCAGGGGATCCAGGTCTCCCGCACCGTCCACCCCGACGTGGTGCTGA
TGGACGTGCGGATGCCGGAGATGGACGGGCTCAGTGCCGCGCGCGAGCTCCTCGATCCCCCGCCGGGGGTGGTGCACCGG
CCGAAGGTGCTGATGCTGACCACCTTCGACATCGACGACTACGTGTACGAGGCCCTGCGCGCGGGGGCCTCCGGCTTCCT
GCTGAAGGACGCCCCGCCGGCCGATCTGATCGCGGCGGTACGGGTGGTCGCCTCGGGCGAGGCGCTGCTGGCTCCGTCGG
TGACGCGGCGGCTGATCGCGGACTTCGTCGAGCGGCGCCCCGCGCCGCGCCGGGACCCGGCGCTGCGGCTGAACGGGCTG
ACCCCGCGGGAGACCGAGGTGCTGGAACTGATCGCGCGCGGGCTGTCCAACCAGGAGATCGCCGGTCATCTGGTGGTCGC
GGAGCAGACGGTCAAGACCCACATCGGGCGGGTGCTGGGCAAGCTGGACCTCCGGGACCGGGCCCAGGCCGTGATCTTCG
CCTACGAGGCGGGGCTGGTGCGTCCGGGCGACGGCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.176

97.788

0.403
  degU Bacillus subtilis subsp. subtilis str. 168

37.445

100

0.376