Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   L3V45_RS07990 Genome accession   NZ_CP091421
Coordinates   1581324..1582103 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus sp. R45     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1576324..1587103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V45_RS07970 (L3V45_07970) trmFO 1577011..1578318 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  L3V45_RS07975 (L3V45_07975) xerC 1578388..1579305 (+) 918 WP_043867088.1 tyrosine recombinase XerC -
  L3V45_RS07980 (L3V45_07980) hslV 1579321..1579866 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  L3V45_RS07985 (L3V45_07985) hslU 1579874..1581286 (+) 1413 WP_254900101.1 HslU--HslV peptidase ATPase subunit -
  L3V45_RS07990 (L3V45_07990) codY 1581324..1582103 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  L3V45_RS07995 (L3V45_07995) flgB 1582457..1582846 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  L3V45_RS08000 (L3V45_08000) flgC 1582846..1583298 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  L3V45_RS08005 (L3V45_08005) fliE 1583309..1583629 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  L3V45_RS08010 (L3V45_08010) fliF 1583672..1585282 (+) 1611 WP_234949687.1 flagellar basal-body MS-ring/collar protein FliF -
  L3V45_RS08015 (L3V45_08015) fliG 1585295..1586311 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  L3V45_RS08020 (L3V45_08020) fliH 1586304..1587059 (+) 756 WP_234949688.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=650935 L3V45_RS07990 WP_003154263.1 1581324..1582103(+) (codY) [Bacillus sp. R45]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=650935 L3V45_RS07990 WP_003154263.1 1581324..1582103(+) (codY) [Bacillus sp. R45]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAATGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471