Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OHA88_RS16735 Genome accession   NZ_CP107985
Coordinates   3691423..3692433 (-) Length   336 a.a.
NCBI ID   WP_328626125.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00353     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3686423..3697433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA88_RS16725 (OHA88_16760) - 3686711..3689821 (-) 3111 WP_328626123.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  OHA88_RS16730 (OHA88_16765) - 3689976..3691394 (-) 1419 WP_328626124.1 GH1 family beta-glucosidase -
  OHA88_RS16735 (OHA88_16770) amiE 3691423..3692433 (-) 1011 WP_328626125.1 ABC transporter ATP-binding protein Regulator
  OHA88_RS16740 (OHA88_16775) - 3692430..3693428 (-) 999 WP_267001492.1 ABC transporter permease -
  OHA88_RS16745 (OHA88_16780) - 3693433..3694413 (-) 981 WP_267001494.1 ABC transporter permease -
  OHA88_RS16750 (OHA88_16785) - 3694410..3695456 (-) 1047 WP_328626126.1 ABC transporter ATP-binding protein -
  OHA88_RS16755 (OHA88_16790) - 3695478..3697154 (-) 1677 WP_328626127.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 36558.96 Da        Isoelectric Point: 6.6640

>NTDB_id=650833 OHA88_RS16735 WP_328626125.1 3691423..3692433(-) (amiE) [Streptomyces sp. NBC_00353]
MSEPVLTISGLNVDYGTGDAAVHALRDIDLTLHRGEVLGLAGESGSGKSTLAYAVTRLLSPPGVITGGEVHYHQRDGERL
DLLTLTAPELRAFRWQELSIVFQGAMNSLNPVHTVHSQLTDVLKAHRPEMNRAERTARAKELLALVGISADRLSAYPHQL
SGGMRQRVMIAMALALEPEIVIMDEPTTALDVVMQRQILRQLVRLREELGFSVVFITHDISLLIEFSDRIAIMYGGRIVE
EAGASDIYQDPRHPYSDGLLHSFPALHGPRRELTGIPGSPPHLSAMPAGCAFHPRCGKALEPCATKVPVLDRPEGDGSRT
VACWLHQPAPAAAPRS

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=650833 OHA88_RS16735 WP_328626125.1 3691423..3692433(-) (amiE) [Streptomyces sp. NBC_00353]
ATGAGCGAGCCCGTCCTCACCATCAGTGGCCTGAACGTGGACTACGGCACCGGGGACGCCGCCGTGCACGCGCTGCGCGA
CATCGACCTCACCCTGCACCGAGGCGAAGTCCTCGGCCTGGCAGGCGAGTCGGGCTCCGGCAAGTCCACCCTGGCGTACG
CCGTCACCCGCCTCCTCTCCCCGCCCGGAGTGATCACCGGTGGCGAGGTCCACTACCACCAGCGCGACGGGGAAAGGCTC
GACCTGCTGACGCTGACCGCCCCCGAGCTCCGCGCCTTCCGCTGGCAGGAGTTGTCGATCGTCTTCCAGGGAGCGATGAA
CTCGCTCAACCCGGTGCACACGGTCCACAGCCAGCTCACCGACGTACTCAAGGCGCACCGCCCCGAGATGAACCGGGCCG
AGCGCACCGCACGCGCGAAGGAGCTGCTGGCGCTGGTCGGCATCTCCGCGGACCGGCTCTCCGCCTACCCGCACCAGCTC
TCCGGCGGCATGCGCCAGCGCGTGATGATCGCGATGGCACTTGCGCTGGAGCCCGAGATCGTCATCATGGACGAGCCCAC
GACGGCCCTGGACGTCGTCATGCAGCGCCAGATCCTGCGCCAGCTGGTCAGGCTCCGCGAGGAGCTGGGGTTCTCGGTCG
TCTTCATCACGCACGACATCTCGCTGCTGATCGAGTTCTCGGACCGGATCGCGATCATGTACGGCGGCCGGATCGTCGAG
GAGGCCGGTGCCTCCGACATCTACCAGGACCCCCGCCACCCCTACAGCGACGGCCTGCTGCACTCCTTCCCGGCTCTGCA
CGGTCCCCGCCGCGAACTCACCGGCATTCCCGGCTCGCCTCCGCATCTGTCCGCGATGCCGGCCGGCTGCGCCTTCCACC
CCCGCTGCGGCAAGGCACTCGAACCGTGCGCCACCAAGGTGCCGGTGCTCGACCGGCCGGAAGGGGACGGCTCCCGCACC
GTGGCCTGCTGGCTGCATCAGCCGGCCCCGGCCGCCGCCCCCCGCTCGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(25-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

38.788

98.214

0.381
  amiE Streptococcus thermophilus LMD-9

38.788

98.214

0.381
  amiE Streptococcus salivarius strain HSISS4

38.485

98.214

0.378