NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	L2Z46_RS04775	Genome accession	NZ_CP091373
Coordinates	980986..981687 (-)	Length	233 a.a.
NCBI ID	WP_000594572.1	Uniprot ID	A0A009IN88
Organism	Acinetobacter baumannii strain AB21-VUB
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 975986..986687

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L2Z46_RS04745 (L2Z46_04745)	-	976293..976736 (-)	444	WP_001246676.1	SRPBCC family protein	-
L2Z46_RS04750 (L2Z46_04750)	tadA	976806..977309 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
L2Z46_RS04755 (L2Z46_04755)	-	977316..978440 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
L2Z46_RS04760 (L2Z46_04760)	ung	978437..979150 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
L2Z46_RS04765 (L2Z46_04765)	-	979201..979797 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
L2Z46_RS04770 (L2Z46_04770)	gspK	980027..980986 (-)	960	WP_000301463.1	type II secretion system minor pseudopilin GspK	-
L2Z46_RS04775 (L2Z46_04775)	xcpW	980986..981687 (-)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
L2Z46_RS04780 (L2Z46_04780)	xcpV	981687..982067 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
L2Z46_RS04785 (L2Z46_04785)	-	982057..982611 (-)	555	WP_000841373.1	type II secretion system protein	-
L2Z46_RS04790 (L2Z46_04790)	-	982621..983229 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
L2Z46_RS04795 (L2Z46_04795)	-	983267..984040 (-)	774	WP_000497298.1	TatD family hydrolase	-
L2Z46_RS04800 (L2Z46_04800)	-	984058..984399 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
L2Z46_RS04805 (L2Z46_04805)	-	984411..985391 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
L2Z46_RS04810 (L2Z46_04810)	kdsB	985403..986164 (-)	762	WP_000680694.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26613.59 Da Isoelectric Point: 9.5501

                                >NTDB_id=650760 L2Z46_RS04775 WP_000594572.1 980986..981687(-) (xcpW) [Acinetobacter baumannii strain AB21-VUB]

MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=650760 L2Z46_RS04775 WP_000594572.1 980986..981687(-) (xcpW) [Acinetobacter baumannii strain AB21-VUB]

ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG

CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA

TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GGTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A009IN88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991

Detailed information NTG0650760