Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OHT01_RS25520 Genome accession   NZ_CP107976
Coordinates   5990769..5993024 (+) Length   751 a.a.
NCBI ID   WP_328555445.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00358     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5985769..5998024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT01_RS25500 (OHT01_25470) - 5986043..5987092 (-) 1050 WP_328555441.1 LacI family DNA-binding transcriptional regulator -
  OHT01_RS25505 (OHT01_25475) - 5987403..5988554 (+) 1152 WP_328555442.1 Gfo/Idh/MocA family oxidoreductase -
  OHT01_RS25510 (OHT01_25480) - 5988551..5989708 (+) 1158 WP_328555443.1 dihydrodipicolinate synthase family protein -
  OHT01_RS25515 (OHT01_25485) - 5989713..5990543 (+) 831 WP_328555444.1 sugar phosphate isomerase/epimerase family protein -
  OHT01_RS25520 (OHT01_25490) recD/recD2/recDB 5990769..5993024 (+) 2256 WP_328555445.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OHT01_RS25525 (OHT01_25495) - 5993310..5994599 (+) 1290 WP_328555446.1 citrate synthase -
  OHT01_RS25530 (OHT01_25500) - 5995185..5997428 (-) 2244 WP_328555447.1 heavy metal translocating P-type ATPase -
  OHT01_RS25535 (OHT01_25505) - 5997522..5997761 (-) 240 WP_328555448.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 81263.74 Da        Isoelectric Point: 6.7482

>NTDB_id=650604 OHT01_RS25520 WP_328555445.1 5990769..5993024(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00358]
MTDQAGAAQAGERRLATLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGSLLGAQVGESLRMEGRWGSHPQYGKQF
TVENYTTVLPATVQGIRRYLGSGLVKGIGPVFADRITQHFGLDTLRIIEEEPKRLIEVPGLGPKRTGRIADAWEEQKAIK
EVMLFLQTVEVSTSIAVRIYKKYGDASISVVKNQPYRLASDVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQSTD
QGHCYLPEERLIADAVKLLQVDTGLVIECLAELAAPAEEGEDPGVVRERVPGPDGGEPVTAVYLVPFHRAELSLSTQVLR
LLRSDRDRMPGFHDVAWDKALAWLRGRTGAELAPEQEAAVRLALTEKVAVLTGGPGCGKSFTVRSIVELARAKGAKVVLA
APTGRAAKRLAELTGAEASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQ
LPSVGAGEVLRDLLADRGPVPAVRLTKVFRQAQQSGVVTNAHRINSGQHPLTDGMKDFFLFVEDDTEEAGRLTVDVAARR
IPARFGLDPRRDIQVLAPMHRGPAGAGHLNGLLQQAITPGRPDLAEKRLGGRVFRVGDKVTQIRNNYDKGENGVFNGTVG
VVTSLDPVEQRLTVRTDEDEEVPYEFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVV
LVGSRKAIGQAVRTVSAGRRCTALDFRLSGS

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=650604 OHT01_RS25520 WP_328555445.1 5990769..5993024(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00358]
ATGACCGATCAGGCGGGGGCCGCCCAGGCAGGTGAGCGGCGACTGGCCACGCTGGAAGGCGTGCTCGAACGCATCACCTA
CGCGAACGAGGAGAACGGCTACACGGTCGCCCGGGTCGACACCGGGCGCGGCGCCGGCGATCTGCTCACCGTCGTCGGCT
CGCTGCTCGGCGCCCAGGTCGGCGAGTCCCTGCGGATGGAGGGCCGCTGGGGCTCCCACCCGCAGTACGGCAAGCAGTTC
ACGGTGGAGAACTACACGACGGTGCTCCCCGCCACCGTCCAGGGCATCCGCCGCTATCTCGGCTCCGGTCTGGTCAAGGG
CATCGGCCCGGTCTTCGCCGACCGCATCACCCAGCACTTCGGCCTCGACACCCTGCGGATCATCGAGGAGGAGCCGAAGC
GGCTCATCGAGGTCCCGGGACTCGGCCCCAAGCGCACGGGGCGGATCGCCGACGCCTGGGAGGAGCAGAAGGCGATCAAG
GAGGTCATGCTCTTCCTCCAGACCGTCGAGGTGTCCACCTCCATCGCGGTCCGCATCTACAAGAAGTACGGCGACGCGTC
GATCTCGGTCGTGAAGAACCAGCCCTACCGCCTGGCGTCCGACGTCTGGGGCATCGGCTTCCTCACCGCGGACAAGATCG
CCCAGTCCGTCGGCATCCCTCACGACAGCCCGGAGCGCGTCAAGGCGGGCCTTCAGTACGCCCTGTCGCAGTCCACCGAC
CAGGGCCACTGCTATCTCCCCGAGGAGCGGCTGATCGCGGACGCGGTGAAGCTGCTCCAGGTCGACACGGGCCTGGTCAT
CGAGTGCCTGGCCGAGCTGGCGGCCCCCGCGGAGGAGGGCGAGGACCCAGGTGTCGTACGGGAGAGGGTTCCGGGCCCGG
ACGGCGGCGAGCCGGTGACGGCCGTCTACCTGGTCCCCTTCCACCGTGCCGAGCTCTCGCTCTCCACGCAGGTGCTGCGG
CTGCTGCGCAGCGACCGGGACCGGATGCCCGGCTTCCACGACGTGGCCTGGGACAAGGCACTGGCCTGGCTGAGGGGACG
TACGGGCGCGGAGCTGGCCCCCGAGCAGGAGGCGGCGGTCCGGCTCGCGCTCACCGAGAAGGTCGCCGTGCTCACCGGAG
GTCCGGGCTGCGGCAAGTCGTTCACGGTCCGCTCGATCGTGGAGCTGGCCCGCGCCAAGGGGGCCAAGGTCGTTCTCGCC
GCGCCCACAGGCCGTGCCGCCAAGCGCCTCGCCGAACTGACCGGGGCCGAGGCCTCCACCGTGCACCGGCTCCTGGAGCT
CAAGCCGGGCGGGGACGCGGCCTACGACAGGGACCGGCCGCTCGACGCCGACCTGGTCGTCGTGGACGAGGCCTCCATGC
TCGACCTGCTGCTCGCCAACAAGCTGGTCAAGGCGGTGCCCCCGGGGGCCCATCTGCTCTTCGTCGGCGATGTCGACCAG
CTTCCCAGCGTCGGCGCGGGCGAGGTGCTGCGCGATCTGCTCGCCGACCGCGGCCCGGTTCCGGCGGTGCGCCTCACCAA
GGTCTTCCGCCAGGCCCAGCAGTCCGGGGTGGTGACCAACGCGCATCGGATCAACTCCGGGCAGCACCCGCTCACCGACG
GCATGAAGGACTTCTTCCTCTTCGTCGAGGACGACACCGAGGAGGCCGGGCGGCTCACCGTGGACGTGGCGGCCCGGCGG
ATTCCGGCCAGGTTCGGCCTCGACCCCCGGCGGGACATCCAGGTCCTCGCGCCCATGCACCGGGGCCCGGCCGGCGCGGG
CCATCTGAACGGACTGCTCCAGCAGGCCATCACCCCCGGCCGCCCGGACCTCGCCGAGAAGCGGCTCGGCGGCCGGGTCT
TCCGGGTCGGCGACAAGGTCACCCAGATCCGCAACAACTACGACAAGGGCGAGAACGGCGTCTTCAACGGCACCGTGGGC
GTCGTCACCTCCCTCGATCCGGTCGAGCAGCGCCTGACGGTGCGCACGGACGAGGACGAGGAGGTGCCGTACGAGTTCGA
CGAACTGGACGAGCTGGCCCACGCCTACGCGGTGACCATCCACCGCTCCCAGGGCAGCGAGTACCCGGCGGTGGTGATCC
CCGTGACCACGGGCGCCTGGATGATGCTCCAGCGCAATCTGCTCTACACGGCGGTCACCCGGGCCAAGAAGCTGGTCGTC
CTCGTCGGTTCGCGCAAGGCGATAGGCCAGGCGGTGCGTACGGTGTCCGCGGGACGCCGGTGCACGGCCCTGGACTTCCG
GCTGTCCGGCTCGTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-722)

AAA domain (AAA_30)

(351-530)

Helix-hairpin-helix domain (HHH_5)

(105-154)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.658

100

0.361