Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG842_RS07555 Genome accession   NZ_CP107960
Coordinates   1659759..1660439 (-) Length   226 a.a.
NCBI ID   WP_266728656.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00376     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1654759..1665439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG842_RS07530 (OG842_07525) - 1654853..1655608 (+) 756 WP_266728646.1 SDR family oxidoreductase -
  OG842_RS07535 (OG842_07530) - 1655643..1655972 (-) 330 WP_266728648.1 putative quinol monooxygenase -
  OG842_RS07540 (OG842_07535) alc 1656072..1657187 (-) 1116 WP_266728650.1 allantoicase -
  OG842_RS07545 (OG842_07540) allB 1657190..1658533 (-) 1344 WP_266728652.1 allantoinase AllB -
  OG842_RS07550 (OG842_07545) - 1658895..1659695 (+) 801 WP_266728654.1 IclR family transcriptional regulator -
  OG842_RS07555 (OG842_07550) amiE 1659759..1660439 (-) 681 WP_266728656.1 ABC transporter ATP-binding protein Regulator
  OG842_RS07560 (OG842_07555) - 1660436..1661530 (-) 1095 WP_266728657.1 ABC transporter permease -
  OG842_RS07565 (OG842_07560) - 1661641..1662849 (+) 1209 WP_266728658.1 sensor histidine kinase -
  OG842_RS07570 (OG842_07565) - 1662846..1663490 (+) 645 WP_266728660.1 response regulator transcription factor -
  OG842_RS07575 (OG842_07570) - 1663518..1663820 (-) 303 WP_266728662.1 DUF5955 family protein -
  OG842_RS07580 (OG842_07575) - 1664111..1664716 (+) 606 WP_266728664.1 nucleotidyltransferase family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 23822.13 Da        Isoelectric Point: 6.6511

>NTDB_id=650218 OG842_RS07555 WP_266728656.1 1659759..1660439(-) (amiE) [Streptomyces sp. NBC_00376]
MTLTLADVTLTYPDGDTRLTALDRISLDVPAGSLTAVVGPSGSGKSSLLAVAATLVTPDTGRVVVAGTETAGLGRADQAR
LRRERIGIVFQQPNLLPSLTAAEQLQVMTHLSGGQARAARGRALELLDAVGLADQAGRRPHQLSGGQRQRINIARALMND
PAVLLVDEPTSALDHERGAAVLDLLVTLTRERSTATVLVTHDLAHLDKADRTVRMDDGRLTVPEPA

Nucleotide


Download         Length: 681 bp        

>NTDB_id=650218 OG842_RS07555 WP_266728656.1 1659759..1660439(-) (amiE) [Streptomyces sp. NBC_00376]
ATGACCCTCACCCTCGCCGACGTCACCCTCACCTACCCCGACGGCGACACCCGGCTCACCGCTCTCGACCGGATCTCGCT
GGACGTGCCCGCGGGTTCGCTCACCGCGGTCGTGGGACCGTCCGGCTCCGGCAAGTCCAGCCTGCTCGCGGTGGCCGCGA
CCCTGGTCACCCCGGACACCGGCCGGGTGGTCGTCGCCGGTACCGAAACCGCCGGTCTCGGCCGCGCGGATCAGGCGCGG
CTGCGGCGCGAGCGCATCGGCATCGTCTTCCAGCAGCCCAATCTGCTGCCGTCGCTCACGGCGGCCGAGCAGCTCCAGGT
GATGACCCACCTCTCGGGCGGTCAGGCGCGCGCGGCGCGCGGCCGGGCACTGGAACTGCTGGACGCGGTCGGCCTGGCCG
ACCAGGCCGGACGCAGGCCCCACCAGCTGTCGGGCGGCCAGCGGCAGCGGATCAACATCGCACGGGCCCTGATGAACGAC
CCGGCGGTGCTGCTGGTCGACGAACCGACCAGCGCGCTCGACCACGAGCGGGGCGCGGCGGTGCTGGACCTGCTGGTCAC
GCTGACCCGGGAGCGGTCGACGGCGACGGTGCTGGTCACGCACGACCTGGCCCATCTGGACAAGGCGGACCGCACGGTCC
GGATGGACGACGGCCGCCTGACGGTGCCGGAACCGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(22-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

35.622

100

0.367
  amiE Streptococcus thermophilus LMD-9

35.622

100

0.367