Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHS70_RS25495 Genome accession   NZ_CP107945
Coordinates   5801114..5802847 (-) Length   577 a.a.
NCBI ID   WP_328400893.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00390     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5796114..5807847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS70_RS25470 (OHS70_25510) - 5796836..5798116 (+) 1281 WP_328400885.1 RNA polymerase sigma factor -
  OHS70_RS25475 (OHS70_25515) - 5798127..5798321 (-) 195 WP_328400887.1 hypothetical protein -
  OHS70_RS25480 (OHS70_25520) - 5798433..5798822 (-) 390 WP_328400889.1 VOC family protein -
  OHS70_RS25485 (OHS70_25525) - 5798836..5799108 (-) 273 WP_328400891.1 metalloregulator ArsR/SmtB family transcription factor -
  OHS70_RS25490 (OHS70_25530) rcrQ 5799186..5801093 (-) 1908 WP_328405897.1 ABC transporter ATP-binding protein Regulator
  OHS70_RS25495 (OHS70_25535) rcrP 5801114..5802847 (-) 1734 WP_328400893.1 ABC transporter ATP-binding protein Regulator
  OHS70_RS25500 (OHS70_25540) - 5802973..5804418 (-) 1446 WP_328400895.1 FGGY family carbohydrate kinase -
  OHS70_RS25505 (OHS70_25545) - 5804454..5804753 (-) 300 WP_328400896.1 YtxH domain-containing protein -
  OHS70_RS25525 (OHS70_25565) - 5806407..5807087 (-) 681 WP_328400898.1 TetR/AcrR family transcriptional regulator -
  OHS70_RS25530 (OHS70_25570) - 5807199..5807687 (+) 489 WP_328400900.1 ATP-binding protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62134.08 Da        Isoelectric Point: 5.8138

>NTDB_id=649882 OHS70_RS25495 WP_328400893.1 5801114..5802847(-) (rcrP) [Streptomyces sp. NBC_00390]
MLIQLLRTFLGPYKKPIAFLVALQLLQTSATLYLPTLNADIIDNGVVKGDTGYILALGAVMIGVSVVQVVCNIGAVFYSA
RTASALGRDVRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLVLLAFTLMVSAPIMCVGGIVMALGQDVPLSAV
LLAVVPVLGIAVALIVKRMRPLFRAMQERLDTVNRVLREQITGNRVIRAFVRDTYEKERFRGANGELTEVSLSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRVDSGAIQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIQEVLGTDSSVVP
PSAPVRELRRSGHLEVRGVDFRYPGAEESVLRGVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTGGEVLVDGVDVR
ELDPALMARTVGLVPQKPYLFSGTVATNLRYGNPGASDDELWQALEVAQAADFVRELEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQQPEIYLFDDSFSALDYATDAALRGALSRETSRATVVIVAQRVSTIRDADRIVVLDEGQVVGTGNHHELMQGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=649882 OHS70_RS25495 WP_328400893.1 5801114..5802847(-) (rcrP) [Streptomyces sp. NBC_00390]
GTGCTGATACAACTGCTGCGGACCTTCCTCGGTCCGTACAAGAAACCCATCGCCTTCCTTGTGGCGCTGCAGCTGCTGCA
GACCAGTGCCACCCTCTATCTGCCGACCCTCAACGCCGACATCATCGACAACGGTGTCGTGAAGGGGGACACGGGCTACA
TCCTGGCCCTGGGCGCCGTCATGATCGGCGTCAGCGTGGTCCAGGTGGTCTGCAACATCGGGGCCGTCTTCTACAGCGCC
CGCACCGCGTCCGCGCTCGGGCGGGACGTCCGGGCCGCCGTCTTCGACCGGGTGCAGAGCTTCTCCGCGCGCGAGGTGGG
GCACTTCGGTGCCCCTTCACTGATCACCCGGACGACCAATGACGTCCAACAGGTCCAGATGCTGGTGCTGCTGGCGTTCA
CCCTGATGGTCTCGGCGCCCATCATGTGCGTCGGCGGCATCGTCATGGCGCTCGGCCAGGACGTGCCGCTGTCCGCGGTG
CTGCTGGCGGTCGTGCCGGTGCTCGGTATCGCGGTGGCGCTGATCGTGAAGCGGATGCGGCCGTTGTTCCGGGCCATGCA
GGAGCGCCTGGACACGGTGAACCGGGTGCTGCGTGAGCAGATCACCGGCAATCGGGTGATCCGCGCCTTCGTACGCGACA
CGTACGAGAAGGAGCGCTTCCGCGGGGCCAACGGCGAGCTGACCGAAGTGTCGCTGTCGACCGGCCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTGGTGAACGTGTCGTCGATCGCCGTCGTCTGGTTCGGTGCGCACCGGGTCGACAGCGG
TGCGATCCAGATCGGCGCGCTGACCGCTTTCCTTGCGTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACGTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGTGCCGAGCGGATCCAGGAGGTGCTGGGCACCGATTCGAGCGTGGTGCCG
CCGAGCGCGCCCGTGCGGGAGCTGCGCCGCAGCGGTCATCTCGAGGTGCGCGGCGTCGACTTCCGCTATCCGGGTGCCGA
GGAGTCGGTACTGCGGGGTGTCGATCTGGTGGCGCGGCCGGGTGAGACGACCGCGATCATCGGGTCGACCGGAAGCGGCA
AGTCGACCCTGCTGGGCCTGGTGCCGCGGCTGTTCGATGTGACGGGCGGCGAAGTGCTCGTCGACGGCGTGGACGTACGG
GAGCTGGATCCGGCGCTGATGGCGCGGACGGTGGGGCTCGTGCCGCAGAAGCCGTATCTGTTCTCGGGGACCGTGGCCAC
GAATCTGCGGTACGGGAACCCCGGAGCGAGCGACGACGAGCTGTGGCAGGCGCTCGAGGTCGCGCAGGCCGCCGACTTCG
TACGGGAACTCGAGGGCGGGCTGAACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGTCAGCGGCTC
GCCATCGCGCGCACGCTGGTGCAGCAGCCGGAGATCTATCTCTTCGACGACTCCTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGCGGTGCGCTGTCCCGCGAGACGTCCCGGGCAACGGTGGTGATCGTCGCCCAGCGGGTGTCGACGATCC
GTGACGCGGACCGGATCGTGGTCCTGGACGAGGGGCAGGTCGTGGGCACCGGAAACCATCACGAGCTGATGCAGGGCAAT
GAGACGTACCGGGAGATCGTCCTCTCGCAGTTGACGGAGGCTGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.346

90.121

0.373