Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OHS70_RS24185 Genome accession   NZ_CP107945
Coordinates   5491148..5493349 (+) Length   733 a.a.
NCBI ID   WP_328400421.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00390     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5486148..5498349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS70_RS24155 (OHS70_24190) - 5487013..5488170 (+) 1158 WP_328400415.1 dihydrodipicolinate synthase family protein -
  OHS70_RS24160 (OHS70_24195) - 5488197..5488994 (+) 798 WP_328405861.1 sugar phosphate isomerase/epimerase family protein -
  OHS70_RS24165 (OHS70_24200) - 5489027..5489434 (-) 408 WP_328400417.1 Imm50 family immunity protein -
  OHS70_RS24170 (OHS70_24205) - 5489421..5489924 (-) 504 WP_328405863.1 Imm50 family immunity protein -
  OHS70_RS24175 (OHS70_24210) - 5489905..5490162 (-) 258 WP_328400419.1 HNH/endonuclease VII fold putative polymorphic toxin -
  OHS70_RS24180 (OHS70_24215) - 5490366..5490506 (-) 141 Protein_4771 SseB family protein -
  OHS70_RS24185 (OHS70_24220) recD/recD2/recDB 5491148..5493349 (+) 2202 WP_328400421.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OHS70_RS24190 (OHS70_24225) - 5493643..5494932 (+) 1290 WP_328400423.1 citrate synthase -
  OHS70_RS24195 (OHS70_24230) - 5495705..5496022 (-) 318 WP_328400425.1 heavy-metal-associated domain-containing protein -
  OHS70_RS24200 (OHS70_24235) - 5496143..5496820 (-) 678 WP_328400427.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 79053.61 Da        Isoelectric Point: 7.2082

>NTDB_id=649877 OHS70_RS24185 WP_328400421.1 5491148..5493349(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00390]
MSNLAVLEGVLERITYANEENGYTVARVDTGRGSDLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVENYTTVLPAT
VQGIRRYLGSGLIKGIGPRIAERIVDHFGVDTLDIIEQQPKKLIEVPGLGPKRTKLIGAAWEEQKAIKEVMIFLQGVGVS
TSIAVRIYKKYEDASISVVKNHPYRLAADVWGIGFLTADKIAQAVGIPHDSPERVKAGLQYALSQSSDQGHCFLPEEQLI
AHAVKLLQVDTGLVIDCLGELAADAEGVVREQVPGPDGGEPVTAVYLVPFHRAELSLAGQLRRLLRADDDRMPAFQDVDW
DKALAWLAQRTGAKLAPEQEAAVRLALTAKVAVLTGGPGCGKSFTVRSIVELARAKKAKVVLAAPTGRAAKRLAELTGAE
ASTVHRLLELKPGGDAAFDRDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLADG
GPVPSVRLTRIFRQAQQSGVVTNAHRINSGLQPVTSGLADFFLFVEEETEDAGRLTVDVAARRIPAKFGLDPRRDVQVLA
PMHRGPAGAGTLNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGRNGVFNGTVGVVTSLHLDDQRLTVLTD
EDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVSA
GRRFTALDHRLAG

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=649877 OHS70_RS24185 WP_328400421.1 5491148..5493349(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00390]
ATGTCCAATCTGGCGGTCCTCGAAGGCGTGCTCGAACGCATCACGTACGCCAACGAGGAGAACGGGTACACGGTCGCGCG
CGTCGACACCGGCCGCGGCAGCGATCTGCTGACCGTGGTCGGCTCGCTGCTCGGTGCGCAGCCGGGAGAGTCACTGCGCA
TGGAGGGCCGTTGGGGCTCCCACCCGCAGTACGGCAAGCAGTTCACGGTGGAGAACTACACGACGGTGCTCCCGGCCACC
GTCCAGGGCATCCGCCGCTATCTCGGCTCCGGCCTGATCAAGGGCATCGGCCCGAGGATCGCCGAGCGGATCGTGGACCA
CTTCGGTGTCGACACCCTCGACATCATCGAGCAGCAGCCGAAGAAGCTGATCGAGGTGCCCGGCCTCGGCCCCAAGCGGA
CCAAGCTGATCGGCGCCGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGATCTTCCTCCAGGGCGTCGGCGTCTCC
ACCTCCATCGCGGTGCGCATCTACAAGAAGTACGAGGACGCCTCCATCTCGGTCGTCAAGAACCATCCGTACCGGCTGGC
GGCCGATGTGTGGGGCATCGGTTTCCTGACCGCCGACAAGATCGCCCAGGCGGTCGGCATACCGCACGACAGCCCCGAAC
GGGTCAAGGCGGGCCTGCAGTACGCCCTGTCGCAGTCCAGCGACCAGGGGCACTGCTTTCTGCCCGAGGAACAGCTGATC
GCCCATGCGGTGAAGCTGCTCCAGGTGGACACCGGTCTCGTCATCGACTGCCTCGGCGAGCTCGCGGCCGACGCGGAGGG
CGTCGTACGGGAGCAGGTGCCCGGCCCGGACGGCGGTGAGCCCGTCACGGCCGTGTACCTCGTCCCCTTCCACCGCGCCG
AGCTCTCGCTGGCCGGCCAGCTGCGCCGGCTGCTGCGGGCCGACGACGACCGGATGCCCGCCTTCCAGGACGTCGACTGG
GACAAGGCGCTGGCCTGGCTCGCGCAGCGCACGGGCGCGAAGCTGGCACCGGAGCAGGAGGCGGCGGTGCGCCTCGCGCT
GACTGCCAAGGTCGCCGTGCTGACCGGTGGACCTGGCTGCGGCAAGTCGTTCACGGTCCGCTCGATCGTGGAGCTGGCGC
GCGCCAAGAAGGCCAAGGTGGTGCTGGCGGCGCCGACCGGCCGGGCTGCCAAGCGGCTGGCCGAGCTGACCGGTGCGGAG
GCGTCGACCGTGCACCGGCTGCTGGAGCTCAAGCCCGGCGGCGACGCGGCCTTCGACCGGGACCGGCCGCTCGACGCCGA
TCTGGTCGTGGTGGACGAGGCGTCCATGCTGGATCTCCTGCTGGCGAACAAGCTGGTGAAGGCGGTGGCGCCCGGCGCGC
ATCTGCTGCTGGTCGGTGACGTGGACCAGCTGCCGAGCGTGGGCGCCGGTGAGGTGCTGCGGGATCTACTCGCGGACGGC
GGGCCGGTGCCCAGCGTGCGGCTGACCCGTATCTTCCGCCAGGCCCAGCAGTCCGGCGTGGTCACCAACGCACACCGGAT
CAATTCGGGGCTGCAGCCCGTCACTTCGGGTCTCGCCGACTTCTTCCTCTTCGTGGAGGAGGAGACGGAGGACGCGGGAC
GGCTCACGGTGGATGTCGCGGCCCGTCGCATTCCGGCGAAATTCGGGCTGGATCCGCGGCGGGATGTGCAGGTGCTCGCC
CCCATGCACCGCGGCCCGGCCGGGGCGGGCACGCTCAACGGGCTGCTCCAGCAGGCGATCACCCCTGCCCGTCCCGATCT
TCCCGAGAAGCGCTTCGGCGGCCGTGTCTTCCGTGTCGGGGACAAGGTCACCCAGATCCGCAACAACTACGAGAAAGGGC
GGAACGGGGTGTTCAACGGCACGGTCGGCGTCGTCACCTCGCTCCACCTCGACGACCAGCGCCTGACGGTGCTCACCGAC
GAGGACGAGGAGGTGCCGTACGACTTCGACGAGCTGGACGAGCTGGCGCATGCCTACGCGGTGACGATCCACCGCTCCCA
GGGGAGTGAATATCCGGCCGTGGTGATCCCTGTCACCACGGGCGCCTGGATGATGCTCCAGCGCAACCTCCTCTACACGG
CCGTCACGCGGGCGAAGAAGCTGGTCGTGCTGGTGGGCTCGCGCAAGGCGATAGGGCAGGCCGTGCGCACCGTTTCCGCA
GGCAGACGCTTCACGGCCCTCGACCACCGGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(335-513)

Helix-hairpin-helix domain (HHH_5)

(93-137)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(657-705)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-637)

Helix-hairpin-helix containing domain (HHH_RecD2)

(143-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.34

100

0.368