Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   H020_RS14400 Genome accession   NZ_AKVY01000001
Coordinates   1829762..1830793 (-) Length   343 a.a.
NCBI ID   WP_000506420.1    Uniprot ID   -
Organism   Streptococcus pneumoniae TIGR4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1824762..1835793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H020_RS0109615 - 1824847..1825608 (-) 762 WP_001107746.1 SDR family NAD(P)-dependent oxidoreductase -
  H020_RS0109620 ytpR 1825650..1826276 (-) 627 WP_000578285.1 YtpR family tRNA-binding protein -
  H020_RS0109625 - 1826292..1826609 (-) 318 WP_000615765.1 thioredoxin family protein -
  H020_RS0109630 - 1826606..1826905 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  H020_RS14565 - 1826999..1827130 (+) 132 WP_001811306.1 hypothetical protein -
  H020_RS14395 - 1827155..1827235 (-) 81 WP_223200463.1 hypothetical protein -
  H020_RS12065 - 1827242..1827433 (-) 192 WP_000291826.1 cell wall-binding protein -
  H020_RS0109640 - 1827594..1828268 (-) 675 WP_000725749.1 LiaF transmembrane domain-containing protein -
  H020_RS0109645 - 1828274..1828720 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  H020_RS0109650 - 1828834..1829337 (-) 504 WP_000800931.1 phosphatase PAP2 family protein -
  H020_RS0109655 - 1829334..1829696 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  H020_RS14400 rcrQ 1829762..1830793 (-) 1032 WP_000506420.1 ABC transporter ATP-binding protein/permease Regulator
  H020_RS14405 rcrP 1830800..1831621 (-) 822 WP_000601684.1 ABC transporter permease Regulator
  H020_RS0109670 - 1831638..1832109 (-) 472 Protein_1818 MarR family winged helix-turn-helix transcriptional regulator -
  H020_RS0109675 - 1832233..1832949 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  H020_RS0109680 ply 1833830..1835245 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  H020_RS0109685 - 1835256..1835666 (-) 411 WP_000595758.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37997.26 Da        Isoelectric Point: 4.4773

>NTDB_id=64982 H020_RS14400 WP_000506420.1 1829762..1830793(-) (rcrQ) [Streptococcus pneumoniae TIGR4]
MGFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGSIRI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHQFIMTLPDGYDTILDDTVTLSVR
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=64982 H020_RS14400 WP_000506420.1 1829762..1830793(-) (rcrQ) [Streptococcus pneumoniae TIGR4]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCGCATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCAATTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAAGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(68-117)

ABC transporter (ABC_tran)

(120-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.357

65.306

0.525
  rcrP Streptococcus mutans UA159

37.572

100

0.379

Multiple sequence alignment