Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG212_RS32085 Genome accession   NZ_CP107944
Coordinates   7433058..7434992 (-) Length   644 a.a.
NCBI ID   WP_328507261.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00391     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7428058..7439992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG212_RS32075 (OG212_32115) dnaG 7429411..7431312 (+) 1902 WP_326582954.1 DNA primase -
  OG212_RS32080 (OG212_32120) - 7431527..7432849 (+) 1323 WP_326582955.1 RNA polymerase sigma factor -
  OG212_RS32085 (OG212_32125) rcrQ 7433058..7434992 (-) 1935 WP_328507261.1 ABC transporter ATP-binding protein Regulator
  OG212_RS32090 (OG212_32130) rcrP 7434992..7436725 (-) 1734 WP_328223007.1 ABC transporter ATP-binding protein Regulator
  OG212_RS32095 (OG212_32135) - 7436942..7438396 (-) 1455 WP_326582958.1 FGGY family carbohydrate kinase -
  OG212_RS32100 (OG212_32140) - 7438466..7438771 (-) 306 WP_326582959.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 644 a.a.        Molecular weight: 69498.77 Da        Isoelectric Point: 5.0551

>NTDB_id=649812 OG212_RS32085 WP_328507261.1 7433058..7434992(-) (rcrQ) [Streptomyces sp. NBC_00391]
MAGPLARMAGAGAPDQRSMDFKGSGKRLLAQFRPERFTMYAMIVCAVLSVGLSVLGPWILGRATDLVFAGVVGREMPAGQ
TKAEVLEGLRQRGDGGVADMLQGTDFTPGEGIDFDAVGGVLLVALGIFLVAGLLMAAATRLSNRAINRTVYHMREDLQAK
LSRLPLSYFDRRQRGEVLSRATNDIDNIGQTLQQSMGQLVNSLLTIIGVLVMMFWVSPLLALVALVTVPVSFVVATRVGK
RSQPHFVAQWRVTGKLNAHIEEMYTGHTLVKVFGRQEESAQQFAEENERLYEAGFKAQFNSGIMQPLMFFVSNINYVLVA
VVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADAVPGVRPEELRGRVALE
GVSFRYDADKPLIEDLSLVVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDVASMSRDELRDGIGMVLQDT
WLFGGSIAENIAYGASAARKVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVL
DEATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGAHAELLAADGAYARLYKAQFAEAV
AEVD

Nucleotide


Download         Length: 1935 bp        

>NTDB_id=649812 OG212_RS32085 WP_328507261.1 7433058..7434992(-) (rcrQ) [Streptomyces sp. NBC_00391]
ATGGCCGGGCCGTTGGCACGGATGGCGGGGGCCGGAGCCCCCGATCAGCGCTCCATGGACTTCAAGGGGTCCGGGAAACG
GCTGCTCGCCCAGTTCAGGCCCGAGCGGTTCACGATGTACGCGATGATCGTGTGCGCCGTGCTCAGCGTGGGTCTCTCGG
TGCTCGGGCCATGGATCCTCGGCAGGGCGACCGACCTCGTCTTCGCCGGTGTCGTCGGGCGGGAGATGCCGGCGGGGCAG
ACCAAGGCCGAGGTGCTGGAAGGGCTGCGGCAGCGCGGCGACGGCGGGGTCGCCGACATGCTGCAGGGCACGGACTTCAC
GCCGGGCGAGGGCATCGATTTCGACGCCGTCGGCGGCGTGCTGCTGGTTGCCCTCGGCATCTTCCTGGTCGCCGGGCTGC
TGATGGCGGCGGCCACGCGGCTCTCCAACCGGGCCATCAACCGGACCGTCTACCACATGCGCGAGGATCTCCAGGCGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACCGGCGGCAGCGCGGTGAGGTGCTGAGCCGGGCGACCAACGACATCGACAA
CATCGGCCAGACGCTCCAGCAGTCGATGGGCCAGCTCGTCAACTCGCTCCTCACCATCATCGGTGTGCTGGTGATGATGT
TCTGGGTGTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACCGTACCGGTGTCGTTCGTGGTCGCCACGCGCGTCGGCAAG
CGGTCGCAGCCGCACTTCGTGGCGCAGTGGCGGGTCACCGGGAAGCTCAACGCGCACATCGAGGAGATGTACACCGGGCA
CACGCTCGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGCAGCAGTTCGCCGAGGAGAACGAACGGCTGTACGAGGCCG
GGTTCAAGGCCCAGTTCAACAGCGGGATCATGCAGCCGCTGATGTTCTTCGTGTCGAACATCAACTATGTGCTGGTCGCG
GTGGTGGGCGGGCTGCGGGTCGCGTCCGGCACGCTGTCCATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTGGCGTCCATGGCGAACCTCGTGCAGTCGGGGGTCGCCTCCGCCGAGCGGATCTTCGAAC
TGCTCGACGCGGAGGAGCAGGAGGCCGACGCCGTGCCCGGGGTGCGGCCGGAGGAGCTGCGGGGGCGGGTGGCGCTGGAG
GGGGTGTCCTTCCGGTACGACGCCGACAAGCCGCTGATCGAGGATCTGTCGCTGGTGGTGGAGCCGGGGCACACGGTGGC
GATCGTGGGGCCGACGGGGGCCGGGAAGACGACCCTGGTGAACCTGTTGATGCGGTTCTACGAGGTCACGGGTGGGCGTA
TCACCCTCGACGGGGTCGATGTCGCGTCCATGTCCCGGGACGAACTCCGGGACGGGATAGGGATGGTGCTTCAGGACACC
TGGCTGTTCGGGGGGAGTATCGCGGAGAACATCGCGTACGGGGCGTCCGCCGCGCGGAAGGTCACGCGGGGGGAGATCGA
GGAGGCGGCGCGGGCCGCCCATGCGGACCGGTTCATCCGGACGCTGCCGGACGGGTACGACACCGTGATCGACGACGAGG
GGACCGGGGTGAGCGCGGGTGAGAAGCAGCTCATCACGATCGCTCGGGCGTTCCTGTCGGATCCGGTGATCCTGGTGCTG
GACGAGGCGACGAGTTCGGTCGACACGCGCACCGAGGTGTTGATCCAGAAGGCCATGGCGAAGTTGGCGCATGGGCGTAC
GTCGTTCGTGATCGCGCATCGGTTGTCGACGATTCGGGATGCGGACACGATTCTGGTGATGGAGAACGGGGCGATCGTGG
AGCAGGGGGCGCACGCGGAGTTGTTGGCCGCGGACGGGGCGTACGCGCGGCTGTACAAGGCGCAGTTCGCGGAGGCGGTT
GCCGAGGTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-351)

ABC transporter (ABC_tran)

(414-565)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.224

96.894

0.39