Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OHS81_RS23990 Genome accession   NZ_CP107940
Coordinates   5475282..5477495 (+) Length   737 a.a.
NCBI ID   WP_328386728.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00400     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5470282..5482495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS81_RS23970 (OHS81_23985) - 5470426..5471385 (-) 960 WP_328386724.1 DUF4158 domain-containing protein -
  OHS81_RS23975 (OHS81_23990) - 5471714..5472865 (+) 1152 WP_328386725.1 Gfo/Idh/MocA family oxidoreductase -
  OHS81_RS23980 (OHS81_23995) - 5472862..5474061 (+) 1200 WP_328386726.1 dihydrodipicolinate synthase family protein -
  OHS81_RS23985 (OHS81_24000) - 5474058..5474918 (+) 861 WP_328386727.1 sugar phosphate isomerase/epimerase family protein -
  OHS81_RS23990 (OHS81_24005) recD/recD2/recDB 5475282..5477495 (+) 2214 WP_328386728.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OHS81_RS23995 (OHS81_24010) - 5477674..5478963 (+) 1290 WP_311628064.1 citrate synthase -
  OHS81_RS24000 (OHS81_24015) - 5479449..5479736 (-) 288 WP_328386729.1 cation transporter -
  OHS81_RS24005 (OHS81_24020) - 5480032..5480727 (+) 696 WP_328386730.1 VTT domain-containing protein -
  OHS81_RS24010 (OHS81_24025) - 5480734..5481777 (-) 1044 WP_328386731.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79266.67 Da        Isoelectric Point: 6.7850

>NTDB_id=649736 OHS81_RS23990 WP_328386728.1 5475282..5477495(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00400]
MVNAAVIEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGALLGAQPGESLRMEGRWGSHPQYGKQFTVENYTTVLPA
TIQGIRRYLGSGLIKGIGPRIADRIVEHFGTDTLDVIETTPARLVEVPGLGPKRTKMIGAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYGDASISVVRNQPYRLAADVWGIGFLTADRIAQSVGIPHDSPDRVKAGLQYALSQSTDQGHCFLPEEQL
IADAVKLLQVDTGLVIDCLGELAADPEGVVREQVPGDGEGAPPVTAVYLVPFHRAEISLAGRLARLLRTDEDRMPAFRDV
DWDKALAWLARRTGAELAPEQQQAVQLALTRRVAVLTGGPGCGKSFTVRSVVELARAKKAKVLLAAPTGRAAKRLSELTG
AEASTVHRLLELKPGGDAAYDADRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLLVGDVDQLPSVGAGEVLRDLLD
GAGPVPAVRLTRIFRQAQQSGVVTNAHRINSGVPPLTTGLTDFFLFAEEDAEEAGRLAVDVAARRIPAKFGLDPRRDVQV
LTPMHRGPAGAGALNGLLQQAVTPARPDLPERRFGGRVFRVGDKVTQIRNNYEKGLNGVFNGTVGVVTALDSDEQRLTVR
TDEDEEIPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKRLVVLVGSRKALGQAVRTV
SAGRRCTALDHRLAGAI

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=649736 OHS81_RS23990 WP_328386728.1 5475282..5477495(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00400]
ATGGTCAACGCAGCCGTGATCGAAGGGGTCCTGGAGCGGATCACCTACGCCAACGAGGAGAACGGCTATACCGTCGCGCG
GGTCGACACCGGCCGTGGCGCGGGCGATCTGCTGACCGTCGTCGGCGCGCTGCTCGGGGCGCAGCCGGGCGAATCGCTGC
GCATGGAGGGCCGCTGGGGCTCCCACCCCCAATACGGCAAACAGTTCACCGTCGAGAACTACACCACCGTCCTGCCCGCC
ACCATCCAGGGCATCCGCCGCTACCTGGGCTCCGGCCTGATCAAGGGCATCGGCCCGCGGATCGCCGACCGCATCGTCGA
GCACTTCGGCACGGACACCCTCGACGTCATCGAGACCACCCCCGCACGCCTGGTGGAGGTGCCGGGCCTGGGCCCCAAGC
GCACGAAGATGATCGGCGCCGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGGTCTTCCTCCAGGGCGTCGGCGTG
TCCACCTCCATCGCGGTGCGGATCTACAAGAAGTACGGCGACGCCTCCATCTCCGTCGTCCGCAACCAGCCCTACCGCCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTGACCGCCGACCGCATCGCGCAGTCCGTCGGCATTCCGCACGACAGCCCCG
ACCGCGTCAAGGCGGGCCTGCAGTACGCGCTGTCGCAGTCCACGGACCAGGGCCACTGCTTCCTGCCCGAGGAACAACTG
ATCGCCGACGCGGTGAAGTTGCTCCAGGTGGACACGGGCCTGGTCATCGACTGCCTGGGCGAGCTGGCCGCGGACCCGGA
GGGCGTGGTCCGCGAACAGGTGCCGGGCGACGGGGAGGGCGCGCCGCCGGTCACCGCCGTCTACCTGGTGCCCTTCCACC
GCGCCGAGATCTCCCTGGCCGGCCGGCTGGCCCGGCTGCTGCGCACGGACGAGGACCGGATGCCGGCGTTCCGGGACGTC
GACTGGGACAAGGCGCTGGCCTGGCTGGCGCGGCGGACGGGCGCCGAGCTGGCCCCCGAGCAGCAGCAGGCGGTGCAGCT
GGCGCTGACCCGTAGGGTCGCGGTGCTCACGGGCGGGCCGGGCTGCGGCAAGTCCTTCACGGTCCGGTCCGTCGTGGAGC
TGGCCCGCGCCAAGAAAGCCAAGGTGCTGCTGGCGGCGCCCACGGGCCGGGCGGCCAAGCGGCTCTCGGAGCTGACCGGC
GCCGAGGCCTCCACGGTCCACCGGCTCCTGGAGCTCAAGCCCGGCGGGGACGCCGCCTATGACGCGGACCGGCCGCTGGA
CGCCGATCTGGTGGTGGTCGACGAGGCCTCGATGCTGGACTTGCTGCTCGCGAACAAGCTGGTCAAGGCGGTGCCGCCGG
GCGCCCATCTGCTGCTGGTCGGGGATGTCGACCAGCTGCCGTCGGTGGGGGCGGGCGAGGTGCTGCGCGATCTCCTCGAC
GGGGCCGGCCCGGTGCCGGCCGTCCGGCTGACCCGGATCTTCCGGCAGGCCCAGCAGTCCGGGGTGGTCACCAACGCCCA
CCGCATCAACTCCGGCGTCCCGCCTCTGACCACCGGACTGACGGACTTCTTCCTGTTCGCCGAGGAGGACGCCGAGGAGG
CCGGACGGCTGGCGGTGGACGTCGCGGCCCGCCGGATCCCGGCAAAGTTCGGCCTCGACCCGCGCCGGGACGTCCAGGTG
CTCACCCCGATGCACCGCGGCCCGGCCGGTGCGGGCGCGCTGAACGGCCTGCTCCAGCAGGCCGTCACCCCCGCCCGCCC
CGACCTGCCCGAGCGCCGCTTCGGCGGCCGGGTCTTCCGCGTCGGCGACAAGGTCACCCAGATCAGGAACAACTACGAAA
AAGGCCTCAACGGCGTCTTCAACGGCACGGTCGGCGTGGTCACCGCCCTGGACTCCGACGAGCAGCGGCTGACCGTGCGC
ACCGACGAGGACGAGGAGATTCCCTACGACTTCGACGAACTCGACGAACTCGCCCACGCCTATGCCGTGACGATCCACCG
CTCGCAGGGTAGTGAGTATCCAGCGGTGGTGATTCCGGTCACCACCAGTGCCTGGATGATGCTGCAGCGCAATTTGCTGT
ATACCGCCGTGACCCGGGCAAAGCGCTTGGTGGTGCTCGTCGGCTCCCGCAAGGCCCTGGGGCAGGCCGTCCGCACGGTA
TCCGCCGGTCGGCGGTGTACGGCGCTCGATCACCGGCTCGCCGGTGCGATATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

AAA domain (AAA_30)

(336-515)

Helix-hairpin-helix domain (HHH_5)

(94-138)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-640)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-707)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

34.817

100

0.361