Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG389_RS31605 Genome accession   NZ_CP107924
Coordinates   6998505..6999176 (-) Length   223 a.a.
NCBI ID   WP_328301998.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00435     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6993505..7004176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG389_RS31585 (OG389_31585) - 6994472..6995521 (+) 1050 WP_328301993.1 enoyl-CoA hydratase/isomerase family protein -
  OG389_RS31590 (OG389_31590) - 6995631..6996014 (+) 384 WP_328301994.1 hypothetical protein -
  OG389_RS31595 (OG389_31595) - 6996034..6996957 (-) 924 WP_328301996.1 SDR family oxidoreductase -
  OG389_RS31600 (OG389_31600) - 6997125..6998429 (+) 1305 WP_328304249.1 cytochrome P450 -
  OG389_RS31605 (OG389_31605) vraR 6998505..6999176 (-) 672 WP_328301998.1 response regulator transcription factor Regulator
  OG389_RS31610 (OG389_31610) - 6999173..6999652 (-) 480 WP_328302000.1 ATP-binding protein -
  OG389_RS31615 (OG389_31615) - 6999876..7000121 (+) 246 WP_328302002.1 hypothetical protein -
  OG389_RS31620 (OG389_31620) - 7000169..7001239 (-) 1071 WP_328302004.1 alpha/beta hydrolase-fold protein -
  OG389_RS31625 (OG389_31625) - 7001578..7002360 (+) 783 WP_328302006.1 hypothetical protein -
  OG389_RS31630 (OG389_31630) - 7002453..7003430 (+) 978 WP_328302009.1 DNA repair exonuclease -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23567.19 Da        Isoelectric Point: 4.8270

>NTDB_id=649502 OG389_RS31605 WP_328301998.1 6998505..6999176(-) (vraR) [Streptomyces sp. NBC_00435]
MTGGPVRVLLVDDQPLVRSGLRVIMADHPDLEVVGEASTGAEAVRLAGDIDPDVVVMDIRMPGMDGIEATRLITSGPATA
RVLVLTTFDEDDHVYGALRAGASGFMVKDMAIDDILAAVRVVAAGDALIAPGVTRRLIAEFAGRPEAAPARSPRPIEGIT
EREREVLTLVGRGLSNSEIAGELFISVATAKSHVSRLLTKLGARDRVQLVITAYETGLVTLPR

Nucleotide


Download         Length: 672 bp        

>NTDB_id=649502 OG389_RS31605 WP_328301998.1 6998505..6999176(-) (vraR) [Streptomyces sp. NBC_00435]
ATGACCGGCGGTCCCGTACGCGTCCTGCTCGTCGACGACCAGCCACTGGTGCGGTCCGGCCTGCGCGTGATCATGGCCGA
CCACCCCGACCTGGAGGTCGTCGGCGAGGCGTCCACCGGCGCCGAGGCGGTGCGGCTGGCCGGGGACATCGACCCCGACG
TGGTGGTGATGGACATCAGGATGCCCGGCATGGACGGGATCGAGGCCACCCGGCTGATCACCTCGGGTCCGGCGACCGCC
CGCGTCCTCGTGCTGACCACCTTCGACGAGGACGACCACGTCTACGGCGCGCTGCGGGCCGGAGCGAGCGGCTTCATGGT
CAAGGACATGGCGATCGACGACATCCTCGCGGCGGTCCGTGTGGTCGCCGCCGGCGACGCGCTGATCGCTCCGGGTGTCA
CGCGCCGCCTGATCGCGGAGTTCGCCGGGCGCCCGGAAGCCGCCCCGGCCCGCTCCCCGAGGCCGATCGAGGGCATCACC
GAGCGCGAACGGGAAGTCCTGACGCTGGTCGGACGCGGCCTGTCGAACTCCGAGATCGCCGGGGAGCTCTTCATCTCCGT
GGCCACCGCGAAATCGCACGTGTCGCGCCTGCTCACCAAGCTGGGCGCCCGGGACCGGGTCCAGCTGGTGATCACCGCGT
ACGAGACGGGTCTCGTCACGCTACCCCGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(159-213)

Response regulator receiver domain (Response_reg)

(8-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.252

95.964

0.377
  degU Bacillus subtilis subsp. subtilis str. 168

37.333

100

0.377