Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG432_RS22325 Genome accession   NZ_CP107918
Coordinates   4990653..4992875 (+) Length   740 a.a.
NCBI ID   WP_328312726.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00442     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4985653..4997875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG432_RS22300 (OG432_22300) - 4986265..4986855 (-) 591 WP_328312721.1 TetR/AcrR family transcriptional regulator -
  OG432_RS22305 (OG432_22305) - 4986950..4987912 (+) 963 WP_328312722.1 alpha/beta hydrolase -
  OG432_RS22310 (OG432_22310) - 4988087..4989241 (-) 1155 WP_328312723.1 CapA family protein -
  OG432_RS22315 (OG432_22315) - 4989400..4989636 (+) 237 WP_328312724.1 hypothetical protein -
  OG432_RS22320 (OG432_22320) - 4989791..4990363 (-) 573 WP_328312725.1 DUF937 domain-containing protein -
  OG432_RS22325 (OG432_22325) recD/recD2/recDB 4990653..4992875 (+) 2223 WP_328312726.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG432_RS22330 (OG432_22330) - 4993055..4994353 (+) 1299 WP_328312727.1 citrate synthase -
  OG432_RS22335 (OG432_22335) - 4995026..4995337 (-) 312 WP_328312728.1 heavy-metal-associated domain-containing protein -
  OG432_RS22340 (OG432_22340) - 4995528..4995728 (-) 201 WP_267053117.1 MarR family transcriptional regulator -
  OG432_RS22345 (OG432_22345) - 4996066..4997091 (-) 1026 WP_328312729.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 79203.72 Da        Isoelectric Point: 6.9341

>NTDB_id=649263 OG432_RS22325 WP_328312726.1 4990653..4992875(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00442]
MSSLTGAAVVEGVLERITYANEESGYTVARVDTGRGGNDLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVENYTTV
LPATIQGIRRYLGSGLIKGIGPVFADRITRHFGPDTLDIIEQEPGRLVEVPGLGPKRTKKIAAAWEEQKAIKEVMVFLQG
VGVSTSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADKIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPE
ERLIADAVKLLQVDTGLVIECLAELVAEEGAVREKVPGPDGGEPVAAVYLVPFHRAELSLAAQVGRLLRTGEDRMPGFAG
VDWDKALGWLAARTGAELAPEQQEAVKLALTSKVAVLTGGPGCGKSFTVRSVVELARAKKAKVVLAAPTGRAAKRLAELT
GAEASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLMVGDVDQLPSVGAGEVLRDLL
AEGGPVPSVRLTRIFRQAQQSGVVTNAHRINSGSPPLTSGLDDFFLFVEDETEDAGRLTVDVAARRIPAKFGLDPRRDIQ
VLAPMHRGPAGAGALNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQVRNNYEKGRNGVFNGTVGVVTALNLDDQCLTV
LTDEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRT
VSAGRRFTALAHRLSGGTLV

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=649263 OG432_RS22325 WP_328312726.1 4990653..4992875(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00442]
ATGTCCAGTCTCACGGGTGCGGCGGTGGTGGAAGGGGTCCTGGAGAGGATCACGTACGCCAATGAGGAGAGCGGATACAC
CGTCGCCCGGGTCGACACCGGCCGCGGCGGCAACGACCTCCTCACGGTGGTCGGCTCGCTGCTCGGCGCGCAGCCGGGGG
AGTCGCTGCGCATGGAGGGCCGCTGGGGCTCCCATCCCCAGTACGGCAAGCAGTTCACCGTGGAGAACTACACGACGGTG
CTGCCCGCCACCATCCAGGGCATCCGCCGCTACCTCGGCTCCGGCCTGATCAAGGGCATCGGCCCGGTCTTCGCCGACCG
CATCACCCGCCACTTCGGCCCCGACACCCTCGACATCATCGAGCAGGAGCCGGGGCGACTGGTCGAGGTCCCGGGCCTCG
GGCCCAAGCGGACCAAGAAGATCGCCGCCGCCTGGGAGGAGCAGAAGGCGATCAAAGAGGTGATGGTCTTCCTCCAGGGC
GTCGGGGTCTCCACCTCCATCGCCGTGCGCATCTACAAGAAGTACGAGGACGCCTCGATCTCGGTCGTGAAGAACCAGCC
CTACCGGCTGGCCGCCGACGTGTGGGGCATCGGATTCCTCACCGCCGACAAGATCGCCCAGGCCGTCGGCATCCCGCACG
ACAGCCCGGAGCGCGTGAAGGCGGGCCTGCAGTACGCGCTGTCGCAGTCCACCGACCAGGGGCACTGCTTCCTGCCCGAG
GAGCGCCTGATCGCGGACGCGGTGAAGCTGCTCCAGGTCGACACCGGGCTCGTCATCGAGTGCCTCGCCGAGCTCGTCGC
CGAGGAGGGGGCCGTGCGCGAGAAGGTGCCGGGGCCCGACGGGGGCGAGCCCGTCGCCGCCGTCTACCTCGTGCCGTTCC
ACCGCGCCGAGCTGTCGCTTGCCGCCCAGGTGGGCCGTCTGCTGCGGACGGGCGAGGACCGGATGCCGGGGTTCGCCGGG
GTCGACTGGGACAAGGCGCTCGGCTGGCTGGCCGCCCGTACCGGCGCCGAGCTCGCGCCCGAGCAGCAGGAGGCCGTGAA
GCTCGCCCTGACCAGCAAGGTCGCCGTGCTCACCGGCGGCCCCGGCTGCGGCAAGTCCTTCACGGTGCGCTCGGTGGTGG
AGCTGGCCCGCGCCAAGAAGGCCAAGGTCGTGCTGGCCGCGCCGACCGGGCGGGCCGCCAAGCGCCTGGCCGAGCTGACC
GGAGCCGAGGCCTCCACCGTGCACCGCCTGCTCGAACTGAAGCCGGGCGGCGACGCGGCGTACGACAAGGACCGCCCGCT
GGACGCGGACCTGGTGGTCGTCGACGAGGCGTCCATGCTCGACCTGCTCCTCGCCAACAAGCTCGTCAAGGCGGTGGCGC
CCGGCGCCCATCTGCTGATGGTGGGGGACGTCGACCAGCTGCCCTCCGTCGGCGCGGGCGAGGTGCTGCGCGATCTGCTC
GCCGAGGGCGGGCCCGTGCCCAGCGTGCGGCTCACCCGGATCTTCCGGCAGGCTCAGCAGTCCGGCGTCGTCACCAACGC
GCACCGCATCAACTCCGGCTCCCCGCCGCTCACTTCGGGCCTGGACGACTTCTTCCTGTTCGTCGAGGACGAGACGGAGG
ACGCGGGGCGGCTCACCGTCGACGTGGCGGCCCGCCGCATCCCGGCGAAGTTCGGGCTCGACCCGCGCCGCGACATCCAG
GTGCTCGCGCCGATGCACCGCGGCCCGGCCGGCGCGGGAGCCCTCAACGGCCTTCTCCAGCAGGCGATCACACCCGCCCG
GCCCGACCTGCCGGAGAAGAGGTTCGGCGGACGGGTCTTCCGCGTCGGCGACAAGGTCACCCAGGTGCGCAACAACTACG
AGAAGGGCAGGAACGGCGTCTTCAACGGCACCGTCGGCGTGGTCACCGCGCTCAACCTCGACGACCAGTGCCTGACGGTC
CTGACGGATGAGGACGAGGAGGTGCCGTACGACTTCGACGAGCTGGACGAGCTGGCCCACGCCTACGCCGTGACGATCCA
CCGCTCCCAGGGAAGCGAATATCCGGCGGTCGTCATCCCGGTCACCACGAGCGCGTGGATGATGCTCCAGCGCAATCTGC
TCTACACGGCCGTGACCCGGGCCAAGAAGCTCGTCGTCCTGGTCGGGTCCCGCAAGGCGATCGGCCAGGCGGTGCGCACC
GTTTCCGCAGGCAGACGCTTTACCGCACTGGCTCACCGGCTGTCAGGGGGCACTTTGGTGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-237)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-640)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(660-708)

Helix-hairpin-helix domain (HHH_5)

(97-146)

AAA domain (AAA_30)

(337-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.509

100

0.368