Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   L3X25_RS04670 Genome accession   NZ_CP091310
Coordinates   902520..903035 (-) Length   171 a.a.
NCBI ID   WP_002780549.1    Uniprot ID   A0A3Z9GFK4
Organism   Campylobacter coli strain M8     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 897520..908035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3X25_RS04655 (L3X25_04655) - 897620..899440 (-) 1821 WP_248869843.1 motility associated factor glycosyltransferase family protein -
  L3X25_RS04660 (L3X25_04660) - 899437..901266 (-) 1830 WP_096788362.1 motility associated factor glycosyltransferase family protein -
  L3X25_RS04665 (L3X25_04665) - 901278..902520 (-) 1243 Protein_908 DUF2920 family protein -
  L3X25_RS04670 (L3X25_04670) ctsG 902520..903035 (-) 516 WP_002780549.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  L3X25_RS04675 (L3X25_04675) tsaD 903039..904046 (-) 1008 WP_224308058.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  L3X25_RS04680 (L3X25_04680) - 904043..905437 (-) 1395 WP_002777754.1 M99 family carboxypeptidase catalytic domain-containing protein -
  L3X25_RS04685 (L3X25_04685) dxr 905434..906510 (-) 1077 WP_224308060.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  L3X25_RS04690 (L3X25_04690) - 906507..907232 (-) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  L3X25_RS04695 (L3X25_04695) - 907241..907579 (-) 339 WP_175056166.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18764.60 Da        Isoelectric Point: 6.4693

>NTDB_id=649079 L3X25_RS04670 WP_002780549.1 902520..903035(-) (ctsG) [Campylobacter coli strain M8]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=649079 L3X25_RS04670 WP_002780549.1 902520..903035(-) (ctsG) [Campylobacter coli strain M8]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z9GFK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.813

100

0.918