Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG370_RS37385 Genome accession   NZ_CP107913
Coordinates   8697432..8698097 (-) Length   221 a.a.
NCBI ID   WP_328472281.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00448     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8692432..8703097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - vraR 8697432..8698097 (-) 666 - - Regulator

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23862.71 Da        Isoelectric Point: 4.9728

>NTDB_id=648907 OG370_RS37385 WP_328472281.1 8697432..8698097(-) (vraR) [Streptomyces sp. NBC_00448]
MIRVLLADDQLLVRAGFRALLDAQHDIEVVGEAADGGQAVRMVRELTPDAVLMDIRMPVMDGLVATRTITADPALVQVRV
VVLTTFELDEYVFEAIRSGASGFLVKDTEPAELLRAVRAVVGGDALLSPGVTRRLIAEFAARSKEPATAADLEQLTDRER
EVMALVGIGLSNDEIARRLVVSPLTAKTHVSRAMVKLGARDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=648907 OG370_RS37385 WP_328472281.1 8697432..8698097(-) (vraR) [Streptomyces sp. NBC_00448]
ATGATCCGCGTACTGCTCGCCGACGACCAGCTTCTGGTCCGGGCCGGGTTCCGGGCGCTGCTGGACGCGCAGCACGACAT
CGAGGTGGTCGGCGAGGCGGCGGACGGCGGGCAGGCGGTGCGCATGGTGCGCGAACTGACCCCGGACGCCGTGCTGATGG
ACATCCGGATGCCGGTGATGGACGGGCTGGTCGCCACCCGCACGATCACCGCGGACCCGGCGCTCGTGCAGGTGCGGGTG
GTGGTGCTGACCACCTTCGAACTCGACGAGTACGTCTTCGAGGCGATCCGGTCAGGTGCCTCCGGGTTCCTGGTGAAGGA
CACCGAGCCGGCCGAACTCCTGCGCGCGGTCCGGGCAGTGGTCGGCGGCGACGCGCTGCTGTCCCCCGGCGTGACCCGCC
GGCTGATCGCCGAGTTCGCCGCCCGTTCCAAGGAGCCGGCCACCGCCGCCGACCTCGAACAGCTCACCGACCGGGAGCGC
GAGGTGATGGCGCTGGTCGGGATCGGCCTGTCCAACGACGAGATCGCCCGCCGGCTGGTGGTCAGCCCGCTCACCGCGAA
GACGCACGTCAGCCGGGCGATGGTGAAGCTCGGCGCCCGCGACCGGGCCCAACTGGTGGTGCTCGCCTACGAGTCGGGGC
TGGTCCGGCCCGGTTGGCTCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.14

97.285

0.371