Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG370_RS31555 Genome accession   NZ_CP107913
Coordinates   7309475..7310254 (-) Length   259 a.a.
NCBI ID   WP_328470230.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00448     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7304475..7315254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - dinR/lexA 7309475..7310254 (-) 780 - - Regulator

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27924.62 Da        Isoelectric Point: 6.7638

>NTDB_id=648900 OG370_RS31555 WP_328470230.1 7309475..7310254(-) (dinR/lexA) [Streptomyces sp. NBC_00448]
MTTTAESATGTLPEHDRSPDGIGPLDVTNEDSTPKPARALPGRPPGIRADSSGLTERQRRVIEVIRDSVQRRGYPPSMRE
IGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRASDAGHPQPTDTTGKPSASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKRDNGHVWLLPHNAAYQP
IPGDEATILGKVVAVLRRI

Nucleotide


Download         Length: 780 bp        

>NTDB_id=648900 OG370_RS31555 WP_328470230.1 7309475..7310254(-) (dinR/lexA) [Streptomyces sp. NBC_00448]
GTGACCACCACCGCAGAGAGCGCCACCGGCACATTGCCCGAGCATGACCGCTCCCCGGACGGAATCGGCCCGTTGGACGT
GACGAACGAAGACAGCACCCCGAAGCCGGCGCGCGCCCTCCCCGGACGGCCCCCGGGAATTCGCGCCGACAGCTCGGGGC
TGACCGAGCGCCAGCGCCGCGTCATCGAGGTCATCAGGGACTCGGTGCAGCGCCGCGGATATCCGCCGTCCATGCGCGAG
ATCGGCCAGGCCGTCGGCCTGTCCAGCACCTCGTCGGTCGCCCACCAGCTCATGGCGCTGGAGCGGAAGGGATTCCTGCG
CCGCGACCCGCACCGCCCCCGCGCGTACGAGGTCCGCGCGTCGGACGCGGGCCACCCGCAGCCCACCGACACCACCGGCA
AGCCCTCGGCCTCGTACGTGCCGCTGGTCGGCCGGATCGCGGCCGGCGGTCCCATCCTCGCCGAGGAGTCCGTCGAGGAC
GTCTTCCCCCTGCCGCGCCAACTCGTCGGTGACGGCGAGCTGTTCGTGCTCAAGGTGGTCGGCGACTCAATGATCGAGGC
GGCCATCTGCGACGGCGACTGGGTGACCGTACGGCGTCAACCGGTCGCCGAGAACGGCGACATCGTCGCGGCGATGCTGG
ACGGCGAGGCGACCGTGAAGCGCTTCAAGCGGGACAACGGCCACGTGTGGCTGCTGCCGCACAACGCGGCGTACCAGCCG
ATCCCCGGTGACGAGGCCACGATCCTCGGCAAGGTCGTGGCAGTGCTGCGCCGGATCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(52-115)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

44.762

81.081

0.363