Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG370_RS30820 Genome accession   NZ_CP107913
Coordinates   7127704..7128915 (+) Length   403 a.a.
NCBI ID   WP_328469982.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00448     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 7122704..7133915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - pilA 7127704..7128915 (+) 1212 - - Machinery gene

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 42723.72 Da        Isoelectric Point: 4.6167

>NTDB_id=648896 OG370_RS30820 WP_328469982.1 7127704..7128915(+) (pilA) [Streptomyces sp. NBC_00448]
METVILVVVIALVVLLGAGGLVVGSRRKKKQQLPPSPPSTPTITKPPAEPHVGDEAETPRDESRRTIEEVELPGATAAPE
APEEVGVPEQVVVEQPEPTAGRLVRLRSRLSRSQNSLGKGLLTLLSRERLDDDTWEEVEDTLITADVGVTPTQELVERLR
TRVRVLGTRTPDELRTLLREELVTLVDPTLDRTLRTESHEESPAVVLVVGVNGTGKTTTTGKLARVLVADGRSVVLGAAD
TFRAAAADQLQTWGERVGARTVRGPEGGDPASVAFDAVKEGIAEGADTVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPV
DEVLLVLDATTGQNGLVQARVFAEVVAITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADDLAPFEPEAFVDAL
IGE

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=648896 OG370_RS30820 WP_328469982.1 7127704..7128915(+) (pilA) [Streptomyces sp. NBC_00448]
ATGGAAACCGTCATCCTTGTCGTCGTCATTGCCCTGGTCGTGCTCCTCGGGGCCGGCGGGCTGGTGGTCGGCAGCCGCCG
CAAGAAGAAGCAGCAGCTGCCGCCGTCCCCGCCGAGCACCCCGACGATCACCAAGCCTCCCGCCGAACCGCACGTCGGGG
ATGAGGCCGAGACCCCACGGGACGAGTCCCGCAGGACCATCGAGGAGGTCGAGCTGCCCGGCGCGACCGCCGCGCCCGAG
GCCCCCGAGGAGGTGGGGGTCCCCGAGCAGGTCGTGGTCGAGCAGCCGGAGCCGACCGCGGGCCGGCTGGTACGGCTGCG
CTCCCGCCTGTCCCGTTCGCAGAACTCGCTCGGCAAGGGCCTGCTCACCCTGCTGTCGCGGGAGCGGCTGGACGACGACA
CCTGGGAGGAGGTCGAGGACACCCTCATCACCGCCGATGTCGGTGTGACCCCGACCCAGGAACTCGTCGAGCGGCTGCGC
ACCCGGGTGCGCGTGCTGGGCACCCGTACCCCCGATGAACTGCGCACGCTGCTGCGGGAGGAACTGGTCACGCTGGTCGA
CCCGACCCTGGACCGTACGCTGCGCACCGAGAGCCACGAGGAGTCCCCGGCCGTCGTGCTGGTCGTCGGGGTCAACGGCA
CCGGCAAGACCACCACCACCGGCAAGCTCGCCCGGGTGCTGGTCGCCGACGGCCGCAGCGTGGTGCTGGGCGCGGCCGAC
ACCTTCCGGGCCGCCGCCGCCGACCAGCTCCAGACCTGGGGCGAACGCGTCGGGGCGCGCACCGTGCGCGGCCCCGAGGG
CGGCGACCCCGCGTCGGTCGCGTTCGACGCGGTCAAGGAGGGCATCGCCGAGGGTGCCGACACCGTGCTGATCGACACCG
CCGGGCGGCTGCACACCAAGACCGGCCTGATGGACGAGCTCGGCAAGGTCAAGCGCGTGGTCGAGAAGCACGGCCCGGTC
GACGAGGTGCTGCTCGTCCTGGACGCCACCACCGGCCAGAACGGCCTGGTGCAGGCCCGCGTCTTCGCCGAGGTGGTGGC
CATCACCGGCATCGTGCTCACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTGGTCGCCGTCCAGCGCGAACTCGGTG
TCCCGGTCAAGCTCATCGGCCTCGGCGAGGGAGCGGACGACCTCGCCCCGTTCGAGCCGGAGGCGTTCGTCGACGCGCTG
ATCGGCGAGTAG

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(117-182)

SRP54-type protein, GTPase domain (SRP54)

(203-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

43.678

86.352

0.377