Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG370_RS16470 Genome accession   NZ_CP107913
Coordinates   3905368..3906363 (-) Length   331 a.a.
NCBI ID   WP_328464954.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00448     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3900368..3911363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - rpoS 3905368..3906363 (-) 996 - - Regulator

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 36717.35 Da        Isoelectric Point: 4.9703

>NTDB_id=648867 OG370_RS16470 WP_328464954.1 3905368..3906363(-) (rpoS) [Streptomyces sp. NBC_00448]
MATRAVARRHAGGTSSVRAAGGEVADRDLVGMYLDEIARTPLLDAAREVELSRDIEAGVYAERILTADAELPASAGSDAK
REELEALVAAGERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITR
SIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDAEPSEIATELGSTPERVSDVLDWARDPVSLNMSVDAEGETEFGD
LVEDGAAPSPEDSVLVMLRREELDGLIDRLDDRTASIIRARYGIVDGRERTLTEVGKEHGLTRERIRQIEKHALADLKRM
ARATGLDYEAA

Nucleotide


Download         Length: 996 bp        

>NTDB_id=648867 OG370_RS16470 WP_328464954.1 3905368..3906363(-) (rpoS) [Streptomyces sp. NBC_00448]
ATGGCAACCCGTGCCGTCGCCCGTCGTCACGCAGGCGGGACCAGCAGCGTTCGCGCCGCAGGCGGGGAAGTCGCCGACCG
CGACCTCGTCGGCATGTACCTGGACGAGATCGCGCGCACACCGCTGCTCGACGCCGCCAGGGAGGTTGAGCTCTCCCGCG
ACATCGAAGCAGGCGTCTATGCGGAGCGCATACTCACCGCCGACGCCGAACTGCCCGCGTCCGCGGGCAGCGACGCCAAG
CGCGAGGAACTCGAAGCGCTCGTCGCCGCAGGCGAACGCGCCAAGGACATCTTCATCCGCTCCAACCTGCGCCTGGTCGT
CGCCGTCGCCCGACGCTACCCGCGCAGCGGTCTGCCGCTGCTCGACCTGATCCAGGAGGGGAACGCCGGCTTGGTCCGCG
CCGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCCACCTACGCGACCTGGTGGATTCGCCAGGCCATCACACGC
TCCATCGCCGACCAGTCCCGCACCATCCGGCTGCCCGTCCACCTCGTCGAGGAACTCGGCAGGATTCGCCGTGTCCAGCG
CGAATTCAACCGTGAGAACGGCCGAGACGCCGAACCCTCCGAGATCGCCACCGAACTCGGCTCCACCCCCGAGCGCGTCT
CCGACGTCCTGGATTGGGCCCGCGACCCGGTCTCGCTCAACATGTCGGTCGACGCCGAAGGCGAGACGGAATTCGGTGAC
CTCGTCGAAGACGGCGCCGCACCCTCCCCGGAGGACTCGGTCCTCGTCATGTTGCGCCGCGAGGAACTCGACGGCCTCAT
CGACCGCCTCGACGACCGCACCGCGTCCATCATCCGGGCCCGCTACGGCATCGTGGACGGCCGCGAACGCACCCTCACCG
AGGTCGGTAAGGAACACGGCCTCACTCGCGAACGCATCCGCCAGATCGAAAAGCACGCCCTCGCCGACCTCAAGCGCATG
GCCCGCGCCACCGGCCTGGACTACGAAGCGGCATAA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(98-167)

Sigma-70, region 4 (Sigma70_r4)

(267-318)

Sigma-70 region 3 (Sigma70_r3)

(177-253)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(28-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.604

91.541

0.363