Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   L2Z53_RS07400 Genome accession   NZ_CP091281
Coordinates   1427096..1429489 (-) Length   797 a.a.
NCBI ID   WP_236365655.1    Uniprot ID   -
Organism   Macrococcoides canis strain B8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1422096..1434489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z53_RS07380 (L2Z53_07380) - 1423157..1423468 (-) 312 WP_099482913.1 DUF1292 domain-containing protein -
  L2Z53_RS07385 (L2Z53_07385) ruvX 1423484..1423903 (-) 420 WP_086042803.1 Holliday junction resolvase RuvX -
  L2Z53_RS07390 (L2Z53_07390) - 1423896..1424141 (-) 246 WP_226997688.1 IreB family regulatory phosphoprotein -
  L2Z53_RS07395 (L2Z53_07395) alaS 1424221..1426845 (-) 2625 WP_236365654.1 alanine--tRNA ligase -
  L2Z53_RS12245 - 1426927..1427061 (+) 135 WP_261785719.1 hypothetical protein -
  L2Z53_RS07400 (L2Z53_07400) recD2 1427096..1429489 (-) 2394 WP_236365655.1 ATP-dependent RecD-like DNA helicase Machinery gene
  L2Z53_RS07405 (L2Z53_07405) - 1429492..1430151 (-) 660 WP_236365656.1 tetratricopeptide repeat protein -
  L2Z53_RS07410 (L2Z53_07410) mnmA 1430252..1431367 (-) 1116 WP_236365657.1 tRNA 2-thiouridine(34) synthase MnmA -
  L2Z53_RS07415 (L2Z53_07415) - 1431379..1432506 (-) 1128 WP_236365658.1 cysteine desulfurase family protein -
  L2Z53_RS07420 (L2Z53_07420) - 1432679..1433674 (+) 996 WP_236365659.1 LLM class flavin-dependent oxidoreductase -
  L2Z53_RS07425 (L2Z53_07425) cymR 1433792..1434214 (-) 423 WP_086042810.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 90173.40 Da        Isoelectric Point: 4.5261

>NTDB_id=648824 L2Z53_RS07400 WP_236365655.1 1427096..1429489(-) (recD2) [Macrococcoides canis strain B8]
MENMTLFEQSFVKGTITRILFYNNDNFYTVLKAEVIESNEDFDDDATITGYLPQIAEGDTYTFTGKIVTHPKYGKQLQAD
KFEKDMPQSRDGIIHYLSSDLFKGVGKKTARTIVEVLGEDALNIILDDKSSLDRVPKLSDEKKDLIFNTIHDNQAIEKIM
IRLNEFGFGPQLAMKIYQFYKDDTLKVINESPYQLVMDIEGIGFNKADELAGKLGIDNNHPERLKAALVFTIEQASNQNG
HTYIPDQVLLETSFNLLTKNGSQVDPDRLVIALTELTEEHKLVEHEKNIYIPSLFYSETKAVQILHRLMNHKDQVKQFEQ
SEVLLAIGELESLFEVSYAERQKDALVTAMNSKLMILTGGPGTGKTTVVRGIVNLYAELHGLSLDYDDYDGQDYPIVVAA
PTGRASKRLQESTGLEATTIHRLIGWTRENKPDDVLETEITAKLVIIDEMSMVDTWLMFQLMKAVPNDAQIIFVGDQDQL
PSVGPGQVFKDMIDAQIMSQIELNEVYRQQEGSSIVELAHQIKRNEPFDITKRYNDRSFIPCSSSQIPEVIEKIVRSAVN
KGYDMRDIQVLAPIYRGPAGIRALNKVLQEILNPSDENKRELQFGDVYFRTGDKVLQLVNRPEDNVFNGDIGEVTGIFMA
AENALNKDVVIVDYDGSEVTYTKADLMEVTHAYCCSIHKSQGSEFPIVIMPVVNQYFRMLQKNILYTGLTRAKQSLIFCG
DVQAFNEGIKRIGNARFTSFYQFLIDYFKTDEADDTKLDNAGDNVLPFNVGEMTEDNMHLVDPMINMEGITPYDFIS

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=648824 L2Z53_RS07400 WP_236365655.1 1427096..1429489(-) (recD2) [Macrococcoides canis strain B8]
TTGGAAAATATGACTTTGTTTGAGCAATCCTTTGTAAAAGGGACAATAACGAGAATATTATTCTATAACAATGATAATTT
CTATACTGTGCTGAAGGCAGAAGTGATTGAATCAAACGAAGATTTCGATGATGATGCTACGATTACAGGGTACCTTCCGC
AAATTGCAGAAGGGGATACATACACGTTCACAGGTAAGATTGTAACGCATCCGAAGTACGGAAAGCAGTTACAGGCAGAT
AAGTTTGAGAAGGATATGCCGCAGTCACGTGACGGTATTATTCATTATTTATCGAGTGATCTGTTTAAAGGGGTCGGTAA
GAAAACAGCGAGAACAATCGTTGAAGTCCTGGGTGAAGATGCGCTAAATATTATTCTCGATGATAAAAGTAGTCTTGACA
GAGTCCCGAAGTTATCAGACGAGAAAAAAGATCTAATTTTTAATACGATACACGACAATCAGGCAATCGAGAAGATTATG
ATTCGTCTGAATGAATTTGGATTCGGTCCACAGCTTGCAATGAAGATCTATCAGTTCTATAAGGATGATACGCTGAAGGT
GATTAATGAATCCCCATATCAACTCGTGATGGATATTGAAGGTATCGGATTTAATAAGGCGGATGAACTGGCAGGGAAAC
TCGGTATCGATAACAATCACCCCGAACGTCTGAAAGCAGCGCTCGTGTTTACGATAGAGCAAGCCTCTAATCAGAATGGT
CATACATATATTCCGGACCAGGTGCTACTTGAAACGAGCTTCAATCTACTGACGAAAAATGGCAGTCAAGTCGATCCAGA
CCGTCTCGTTATCGCACTCACTGAACTCACAGAGGAACATAAGCTCGTTGAACATGAGAAGAACATCTATATCCCGAGTC
TATTCTATTCTGAAACGAAAGCTGTACAAATATTGCATCGATTAATGAATCATAAGGATCAGGTGAAACAGTTCGAACAG
TCTGAAGTATTGCTGGCAATCGGGGAACTGGAGTCACTGTTCGAAGTGAGTTATGCAGAACGACAGAAAGATGCGCTTGT
AACGGCGATGAACAGTAAACTGATGATCTTAACGGGGGGACCAGGTACAGGAAAGACGACGGTTGTGCGCGGTATTGTGA
ATTTGTATGCTGAACTGCATGGGTTAAGTCTAGATTATGATGACTATGATGGACAGGACTATCCGATTGTTGTCGCAGCA
CCCACTGGTCGTGCATCGAAACGACTTCAGGAGTCTACAGGACTTGAAGCGACGACAATACACAGGTTAATTGGCTGGAC
GAGAGAGAATAAACCCGATGATGTACTGGAAACGGAAATTACAGCGAAGCTTGTCATTATCGATGAAATGTCGATGGTTG
ATACGTGGCTCATGTTTCAGTTGATGAAAGCTGTGCCGAATGATGCACAGATTATCTTTGTCGGTGACCAGGACCAGCTG
CCATCCGTTGGACCAGGGCAAGTGTTCAAAGACATGATAGATGCACAAATTATGTCGCAGATTGAGCTGAATGAAGTGTA
CAGACAGCAGGAAGGTTCATCAATCGTTGAACTTGCGCACCAAATTAAGCGTAATGAACCATTTGATATTACGAAACGTT
ATAATGACAGAAGCTTTATACCGTGCTCAAGCAGTCAAATACCAGAAGTGATCGAGAAGATCGTGCGCAGTGCTGTGAAT
AAAGGGTATGACATGCGTGATATACAAGTACTCGCACCGATATATAGAGGGCCAGCGGGTATACGTGCGCTGAACAAAGT
ACTGCAGGAAATATTGAATCCAAGTGATGAAAACAAGCGTGAATTACAGTTTGGTGATGTTTATTTCAGAACAGGTGACA
AAGTGCTGCAGCTTGTCAATCGACCGGAAGACAATGTGTTTAACGGCGATATTGGTGAAGTGACGGGTATCTTCATGGCG
GCAGAGAACGCACTGAATAAAGATGTTGTCATAGTGGATTATGATGGGAGTGAAGTGACGTATACGAAAGCGGATTTAAT
GGAAGTTACACATGCCTACTGCTGCTCCATTCATAAATCACAAGGTTCAGAATTTCCGATTGTCATTATGCCGGTTGTCA
ATCAATACTTCAGAATGCTGCAGAAGAATATACTCTATACCGGATTAACACGCGCGAAACAGTCACTTATTTTCTGTGGA
GATGTACAGGCGTTTAATGAAGGAATAAAGCGAATCGGTAACGCAAGATTTACAAGCTTCTATCAGTTTCTTATCGATTA
TTTTAAGACAGATGAAGCAGATGATACAAAGCTTGATAATGCAGGTGACAACGTATTACCTTTCAACGTTGGTGAGATGA
CTGAAGACAATATGCATCTCGTTGATCCGATGATCAACATGGAAGGTATAACACCCTATGATTTTATAAGTTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-718)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-653)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(338-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

51.553

100

0.521