Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG870_RS14915 Genome accession   NZ_CP107902
Coordinates   3162182..3164113 (+) Length   643 a.a.
NCBI ID   WP_327690963.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00461     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3157182..3169113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG870_RS14900 (OG870_14875) - 3158501..3158806 (+) 306 WP_266584830.1 YtxH domain-containing protein -
  OG870_RS14905 (OG870_14880) - 3158891..3160333 (+) 1443 WP_266513877.1 FGGY family carbohydrate kinase -
  OG870_RS14910 (OG870_14885) rcrP 3160449..3162182 (+) 1734 WP_266513880.1 ABC transporter ATP-binding protein Regulator
  OG870_RS14915 (OG870_14890) rcrQ 3162182..3164113 (+) 1932 WP_327690963.1 ABC transporter ATP-binding protein Regulator
  OG870_RS14920 (OG870_14895) - 3164168..3165469 (-) 1302 WP_266513885.1 RNA polymerase sigma factor -
  OG870_RS14925 (OG870_14900) dnaG 3165970..3167868 (-) 1899 WP_266513888.1 DNA primase -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69572.03 Da        Isoelectric Point: 6.4335

>NTDB_id=648397 OG870_RS14915 WP_327690963.1 3162182..3164113(+) (rcrQ) [Streptomyces sp. NBC_00461]
MAGPMARMMGQGGGPDSRSLDFKVSGKRLIARFKPERLTIYALLVCVVVSVGLNVIGPKILGKATDLVFAGIIGRQMPAG
ATKEQVLASMRERGQGQVADMLRSTDFTPGKGIDFGAVGNVLLIAVCTFLAAGLLMAVATRLVNRAVNRTMYRMREDVQA
KLSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLAVMFWVSWLLALVALVTVPLSFVVATRVG
KRSQPHFVQQWRSTGKLNAHVEEMYTGHTLVKVFGRQQESAQQFAEQNDALYEAGFKAQFNSGVMQPLMMFVSNLNYVLV
AVVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPVRGERPAELRGLVEL
DNISFSYDPDKPLIEHLSLKAEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDIASMSRDELRAGIGMVLQD
TWLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPTILVLD
EATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGTHADLLAADGAYGRLYKAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=648397 OG870_RS14915 WP_327690963.1 3162182..3164113(+) (rcrQ) [Streptomyces sp. NBC_00461]
ATGGCCGGGCCGATGGCACGGATGATGGGCCAGGGCGGCGGCCCCGACAGCCGTTCGTTGGACTTCAAGGTGTCGGGCAA
GCGCCTGATCGCCCGGTTCAAACCAGAACGTCTCACGATCTACGCGCTGCTGGTCTGCGTGGTCGTGAGCGTCGGCCTGA
ACGTGATCGGGCCGAAGATCCTCGGCAAGGCCACCGACCTCGTCTTCGCCGGCATCATCGGGCGTCAGATGCCGGCCGGG
GCCACCAAGGAACAGGTTCTCGCGTCGATGCGGGAGCGGGGGCAGGGCCAGGTCGCCGACATGCTCCGCAGCACCGACTT
CACGCCCGGCAAGGGCATCGACTTCGGCGCCGTGGGCAACGTACTGCTGATCGCGGTGTGTACGTTCCTCGCCGCCGGTC
TGCTGATGGCGGTGGCGACGCGGCTGGTGAACCGGGCCGTCAACCGGACCATGTACCGGATGCGTGAGGACGTGCAGGCG
AAGCTGTCGCGGCTGCCGTTGTCGTACTTCGACAAACGACAGCGCGGTGAGGTGCTGTCCCGGGCGACGAACGACATCGA
CAACATCGGCCAGACGCTGCAGCAGTCGATGGGCCAGCTCATCAACTCGGTGCTGACCATCATCGGCGTGCTCGCGGTGA
TGTTCTGGGTGTCCTGGCTGCTGGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGTTCGTCGTCGCCACGCGCGTCGGC
AAGCGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACCGGCAAGCTGAACGCCCACGTCGAGGAGATGTACACCGG
CCACACGCTGGTGAAGGTGTTCGGGCGGCAGCAGGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGG
CCGGGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTCAACTACGTGCTGGTG
GCGGTCGTCGGTGGTCTGCGGGTCGCGTCCGGCGCGCTGTCGATCGGCGACGTACAGGCCTTCATCCAGTACTCGCGGCA
GTTCTCGATGCCGCTGACACAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCCGAGCGGATCTTCG
AACTCCTGGACGCGGAGGAGCAGGAGGCGGATCCGGTGCGCGGCGAGCGGCCCGCGGAGCTGCGGGGGCTGGTGGAGCTG
GACAACATCTCCTTCAGCTACGACCCCGACAAGCCGCTGATCGAGCACCTGTCCCTGAAGGCGGAACCCGGGCACACCGT
CGCGATCGTCGGCCCGACGGGAGCCGGCAAGACCACGCTGGTCAATCTGCTCATGCGGTTCTACGACGTGTCCGGCGGGC
GTATCACTCTCGACGGCGTCGACATCGCGAGCATGTCCCGGGACGAACTGCGGGCCGGGATCGGCATGGTGCTGCAGGAC
ACCTGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGCGCCTCGCGGGAGGTCACCCGGGGCGAGATCGAGGA
GGCGGCGCGGGCCGCGCACGCCGACCGGTTCGTGCGCACGCTTCCCGACGGCTACGACACCGTGATCGACGACGAGGGCT
CGGGCGTCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTTTCGGACCCGACGATCCTGGTGCTCGAC
GAGGCGACGAGTTCGGTGGACACCCGCACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGCAGGACGTC
GTTCGTGATCGCGCACCGGCTGTCGACCATCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGGTCGATCGTGGAAC
AGGGCACCCACGCGGACCTGTTGGCGGCCGACGGGGCGTACGGGCGGCTGTACAAGGCGCAGTTCGCCCAGGCGGTGGCC
GAGGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(415-564)

ABC transporter transmembrane region (ABC_membrane)

(43-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.453

96.112

0.389