Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG803_RS22890 Genome accession   NZ_CP107894
Coordinates   5002617..5004821 (+) Length   734 a.a.
NCBI ID   WP_327684068.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00467     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4997617..5009821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG803_RS22860 (OG803_22890) - 4997897..4998727 (+) 831 WP_327684059.1 sugar phosphate isomerase/epimerase family protein -
  OG803_RS22865 (OG803_22895) - 4998844..4999449 (+) 606 WP_327684061.1 hypothetical protein -
  OG803_RS22870 (OG803_22900) - 4999542..5000096 (+) 555 WP_313946234.1 SigE family RNA polymerase sigma factor -
  OG803_RS22875 (OG803_22905) - 5000093..5000767 (+) 675 WP_327684064.1 hypothetical protein -
  OG803_RS22880 (OG803_22910) - 5001060..5001494 (-) 435 WP_327684066.1 hypothetical protein -
  OG803_RS22885 (OG803_22915) - 5001803..5002459 (-) 657 Protein_4512 RHS repeat-associated core domain-containing protein -
  OG803_RS22890 (OG803_22920) recD/recD2/recDB 5002617..5004821 (+) 2205 WP_327684068.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG803_RS22895 (OG803_22925) - 5005052..5006350 (+) 1299 WP_313946237.1 citrate synthase -
  OG803_RS22900 (OG803_22930) - 5006768..5009038 (-) 2271 WP_327684072.1 heavy metal translocating P-type ATPase -
  OG803_RS22905 (OG803_22935) - 5009147..5009452 (-) 306 WP_327684074.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 79020.46 Da        Isoelectric Point: 6.7028

>NTDB_id=648204 OG803_RS22890 WP_327684068.1 5002617..5004821(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00467]
MSNPAVVEGVLERITYANEENGYTVARVDTGRGADLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVENYTTVLPAT
VQGIRRYLGSGLIKGIGPRIAERIVDHFGIETLDIIEREPKKLIEVPGLGPKRTMLIGAAWEEQKAIKEVMIFLQGVGVS
TSIAVRIYKKYGDASISVVKNQPYRLAADVWGIGFLTADKIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPEEQLI
ADAVKLLQVDTGLVIECLAELAAEEEGVVRESVPGADGGEAVTAVYLVPFHRAEISLAAQVNRLLRTDEDRMPGFRDVVW
DKALAWLADRTGAALAPEQEAAVRLALTSKVAVLTGGPGCGKSFTVRSVVELARAKKAKVVLAAPTGRAAKRLSELTGAE
ASTVHRLLELRPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLADG
GPVPHVRLTRIFRQAQQSGVVTNAHRINSGVPPITSGLSDFFLFVEDETEDAGRVTVDVAARRIPAKFGLDPRRDVQVLA
PMHRGPAGAGTLNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGKNGVFNGTVGVVTSLQPDDQRLTVLTD
EDEEVVYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVSA
GRRFTALDHRLTGG

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=648204 OG803_RS22890 WP_327684068.1 5002617..5004821(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00467]
ATGTCCAATCCAGCAGTGGTCGAAGGGGTCCTCGAGCGGATCACCTACGCCAACGAGGAGAACGGGTATACGGTCGCCCG
CGTCGACACCGGACGCGGCGCCGATCTCCTCACGGTCGTCGGCTCGCTGCTCGGCGCGCAGCCGGGCGAGTCCCTGCGCA
TGGAGGGCCGCTGGGGTTCCCATCCGCAGTACGGCAAGCAGTTCACCGTGGAGAACTACACCACCGTCCTCCCGGCCACC
GTCCAGGGCATACGCCGTTATCTCGGCTCCGGTCTGATCAAGGGCATCGGCCCGCGGATCGCCGAGCGCATCGTCGACCA
TTTCGGCATCGAGACCCTCGACATCATCGAGCGGGAGCCGAAGAAGCTCATCGAGGTCCCCGGACTCGGCCCGAAGCGGA
CCATGTTGATCGGCGCCGCCTGGGAGGAACAGAAGGCCATCAAGGAGGTCATGATCTTCCTCCAGGGTGTCGGCGTCTCC
ACCTCCATCGCCGTGCGCATCTACAAGAAGTACGGGGACGCCTCGATCTCGGTCGTGAAGAACCAGCCCTACCGCCTCGC
GGCCGACGTGTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAGGCCGTCGGCATACCCCACGACAGCCCGGAGC
GGGTCAAGGCCGGCCTCCAGTACGCCCTGTCCCAGTCGACCGACCAGGGCCACTGCTTCCTGCCCGAGGAGCAGTTGATC
GCGGACGCCGTGAAGCTCCTCCAGGTGGACACCGGCCTGGTCATCGAGTGCCTCGCCGAGCTCGCGGCCGAGGAGGAGGG
GGTCGTGCGGGAAAGCGTGCCCGGGGCGGACGGGGGCGAGGCGGTGACCGCCGTCTATCTGGTGCCCTTCCACCGTGCCG
AGATCTCCCTGGCCGCCCAGGTGAACCGCCTGCTGCGCACCGACGAGGACCGGATGCCGGGCTTCCGGGACGTCGTGTGG
GACAAAGCGCTCGCCTGGCTCGCCGACCGCACCGGCGCCGCGCTGGCCCCCGAGCAGGAGGCCGCGGTGCGACTCGCGCT
CACCAGCAAGGTCGCCGTGCTCACCGGTGGCCCCGGCTGCGGAAAGTCCTTCACCGTGCGGTCGGTGGTGGAGCTGGCCC
GCGCCAAGAAGGCCAAGGTGGTGCTGGCCGCCCCCACCGGCCGCGCGGCCAAGCGGCTCTCGGAGCTGACCGGGGCGGAG
GCGTCCACCGTCCACCGGCTGCTGGAACTCAGACCGGGCGGCGACGCGGCGTACGACCGTGACCGCCCGCTCGACGCCGA
TCTGGTCGTCGTGGACGAGGCGTCCATGCTCGATCTGCTGCTGGCCAACAAGCTGGTCAAGGCTGTCGCACCGGGGGCGC
ATCTGCTGCTCGTCGGGGACGTCGACCAGCTGCCGAGCGTGGGCGCGGGCGAAGTGCTGCGGGATCTGCTCGCGGACGGC
GGCCCGGTGCCCCATGTCCGCCTCACGCGGATCTTCCGGCAGGCCCAGCAGTCCGGTGTGGTGACCAACGCCCACCGCAT
CAACTCCGGTGTTCCGCCGATCACTTCGGGTCTCTCCGACTTCTTCCTCTTCGTCGAGGACGAGACGGAGGACGCGGGAA
GGGTCACCGTGGACGTGGCGGCCCGTCGGATTCCGGCCAAGTTCGGGCTCGATCCGCGGCGGGATGTGCAGGTTCTGGCG
CCCATGCACCGGGGCCCGGCGGGTGCGGGCACCCTCAACGGTCTGCTGCAACAGGCCATTACGCCCGCGCGGCCGGATCT
CCCCGAGAAGCGTTTCGGCGGACGGGTCTTCCGGGTCGGCGACAAGGTCACCCAGATTCGCAACAATTACGAGAAGGGAA
AGAACGGCGTCTTCAACGGCACGGTCGGCGTGGTCACCTCGCTCCAGCCGGATGATCAGCGGCTGACGGTGTTGACGGAC
GAGGACGAGGAGGTCGTGTACGACTTCGACGAGCTGGACGAGCTGGCCCATGCGTATGCCGTGACCATCCACCGTTCCCA
GGGCAGCGAATACCCGGCGGTGGTGATCCCGGTCACCACCGGAGCATGGATGATGCTTCAGCGGAACCTCCTCTACACGG
CGGTCACCCGGGCCAAGAAGCTCGTCGTGCTCGTCGGCTCCCGCAAGGCGATAGGACAGGCAGTGCGCACCGTTTCCGCA
GGCAGGCGCTTCACCGCGCTCGACCACCGGCTGACCGGCGGCTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(657-705)

AAA domain (AAA_30)

(335-513)

Helix-hairpin-helix containing domain (HHH_RecD2)

(143-233)

Helix-hairpin-helix domain (HHH_5)

(93-133)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-637)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.34

100

0.368