Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHV16_RS09040 Genome accession   NZ_CP107889
Coordinates   1990885..1991913 (-) Length   342 a.a.
NCBI ID   WP_327669283.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00470     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1985885..1996913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHV16_RS09025 (OHV16_09020) - 1986516..1988003 (-) 1488 WP_327669280.1 MFS transporter -
  OHV16_RS09030 (OHV16_09025) - 1988120..1988611 (+) 492 WP_327669281.1 MarR family winged helix-turn-helix transcriptional regulator -
  OHV16_RS09035 (OHV16_09030) - 1988754..1989956 (-) 1203 WP_327669282.1 IS110 family transposase -
  OHV16_RS09040 (OHV16_09035) cytR 1990885..1991913 (-) 1029 WP_327669283.1 LacI family DNA-binding transcriptional regulator Regulator
  OHV16_RS09045 (OHV16_09040) - 1992053..1993360 (+) 1308 WP_327669284.1 extracellular solute-binding protein -
  OHV16_RS09050 (OHV16_09045) - 1993357..1994322 (+) 966 WP_327669285.1 sugar ABC transporter permease -
  OHV16_RS09055 (OHV16_09050) - 1994319..1995170 (+) 852 WP_327669286.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37278.63 Da        Isoelectric Point: 6.5074

>NTDB_id=648062 OHV16_RS09040 WP_327669283.1 1990885..1991913(-) (cytR) [Streptomyces sp. NBC_00470]
MLQGMRDDEDLGRITLAEVAQKAGVSISTVSKVLNGRQDVAAPTRVKVERVLEAHSYRRTTRAAREAPLVELVFHELDSI
WAMELIRGVENVAKAHQASVVLTESGTRHAPAPDWIEGVMQRRPRGVVLVFSALPAEVKERLRSRSIPFVIVDPAGDPDP
DVPSVGSANWNGGRVATRHLVDLGHRRIGIITGPDDVLCSHARLDGYRSALSMAGIEGDRALVRYGDFHVEGGFEHALEL
LDLPEPPTAIFAGSDLQALGVLEAARVRGLRVPQDLSVVGYDDVPVARWSSPALTTVHQPLREMAEEAVQMIMRLRVQEP
VTTRLELATSLIVRKSTAPPAS

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=648062 OHV16_RS09040 WP_327669283.1 1990885..1991913(-) (cytR) [Streptomyces sp. NBC_00470]
ATGCTCCAAGGCATGCGTGATGACGAGGACTTGGGTCGCATCACCCTCGCCGAGGTGGCCCAAAAGGCAGGCGTCTCCAT
TTCGACAGTTTCGAAAGTGCTCAACGGGCGGCAGGACGTCGCCGCCCCGACGCGGGTCAAGGTGGAGCGGGTCCTGGAGG
CGCACTCCTACCGGCGCACGACGCGGGCCGCCCGCGAGGCGCCGCTCGTCGAGCTGGTCTTCCACGAGCTGGACAGCATC
TGGGCGATGGAGCTGATCCGCGGCGTGGAGAACGTCGCCAAGGCGCACCAGGCCAGCGTCGTGCTGACCGAGAGCGGGAC
GCGGCACGCGCCCGCCCCCGACTGGATCGAAGGCGTGATGCAGCGCAGGCCGCGCGGCGTCGTGCTCGTCTTCTCGGCGC
TGCCCGCCGAGGTCAAGGAGCGGCTGCGGTCGCGCTCCATCCCGTTCGTCATCGTCGACCCGGCGGGCGATCCCGACCCG
GACGTGCCCTCCGTCGGCTCGGCGAACTGGAACGGGGGGCGGGTCGCCACGCGGCACCTGGTGGACCTCGGGCATCGCCG
CATCGGGATCATCACGGGGCCCGACGACGTGCTCTGCTCGCACGCCCGCCTCGACGGCTACCGCTCCGCGCTCAGCATGG
CGGGCATCGAAGGCGACCGCGCCCTCGTCCGCTACGGCGACTTCCATGTCGAGGGCGGCTTCGAGCACGCCCTCGAACTC
CTCGACCTGCCCGAGCCGCCCACGGCGATCTTCGCCGGCAGCGACCTGCAGGCGCTCGGCGTCCTGGAGGCGGCCCGGGT
CCGCGGCCTGCGGGTACCGCAGGACCTCTCGGTGGTCGGTTACGACGACGTCCCCGTGGCGCGCTGGTCGAGCCCGGCCC
TGACGACGGTGCACCAGCCGCTGCGGGAGATGGCCGAGGAGGCGGTGCAGATGATCATGCGGTTGCGCGTCCAGGAGCCG
GTGACCACACGCCTCGAACTGGCGACGAGCCTCATCGTCCGCAAGAGCACGGCGCCGCCGGCTTCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(15-58)

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.237

97.368

0.363