Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SCAZ3_RS08800 Genome accession   NZ_AIDX01000001
Coordinates   1806578..1807444 (+) Length   288 a.a.
NCBI ID   WP_003047901.1    Uniprot ID   A0AAV3FR50
Organism   Streptococcus canis FSL Z3-227     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1801578..1812444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS08770 (SCAZ3_04370) - 1801604..1802479 (+) 876 WP_003047882.1 F0F1 ATP synthase subunit gamma -
  SCAZ3_RS08775 (SCAZ3_04375) atpD 1802640..1804046 (+) 1407 WP_003047885.1 F0F1 ATP synthase subunit beta -
  SCAZ3_RS08780 (SCAZ3_04380) - 1804059..1804475 (+) 417 WP_003047887.1 F0F1 ATP synthase subunit epsilon -
  SCAZ3_RS08785 (SCAZ3_04390) - 1804775..1805011 (+) 237 WP_003047892.1 DUF1146 family protein -
  SCAZ3_RS08790 (SCAZ3_04395) murA 1805076..1806350 (+) 1275 WP_003047895.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SCAZ3_RS08795 (SCAZ3_04400) - 1806354..1806542 (+) 189 WP_003047898.1 DNA-directed RNA polymerase subunit beta -
  SCAZ3_RS08800 (SCAZ3_04405) endA 1806578..1807444 (+) 867 WP_003047901.1 DNA/RNA non-specific endonuclease Machinery gene
  SCAZ3_RS08805 (SCAZ3_04410) pheS 1807727..1808770 (+) 1044 WP_003047904.1 phenylalanine--tRNA ligase subunit alpha -
  SCAZ3_RS08815 (SCAZ3_04425) pheT 1809487..1811892 (+) 2406 WP_039994813.1 phenylalanine--tRNA ligase subunit beta -
  SCAZ3_RS12315 - 1811927..1812219 (-) 293 Protein_1722 integrase core domain-containing protein -
  SCAZ3_RS11480 - 1812163..1812374 (+) 212 Protein_1723 IS3 family transposase -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31675.74 Da        Isoelectric Point: 10.0123

>NTDB_id=64801 SCAZ3_RS08800 WP_003047901.1 1806578..1807444(+) (endA) [Streptococcus canis FSL Z3-227]
MLTKKKRTRALNSLLLILLVLGSSYLAKSDLIASNHPIKQFYQTLVGEKKESSLTNNNLQADVPTEALAASVLTHSIKEQ
LGADIQWNGAGAFIINQNKTDLNAAVASLPYANNETKWVQGQKVPTRANALLDKSTRQYRDRSQLDKGYRSFKPAGWHQL
YPLKGSYDHAVDRGHLLGYALIGGLKGFDASTSNPNNIATQLSWANQADKSYATGQNYYEGLVRRALDKGHRVRYRVTLL
YDGDNLLASGSHLEAKSADGSLTFNVFVPNVQPGLTVDYRTGQIAINP

Nucleotide


Download         Length: 867 bp        

>NTDB_id=64801 SCAZ3_RS08800 WP_003047901.1 1806578..1807444(+) (endA) [Streptococcus canis FSL Z3-227]
ATGTTAACAAAGAAAAAACGAACAAGAGCCCTTAATTCCTTGCTATTGATTTTATTAGTTTTGGGATCGAGTTACCTTGC
TAAAAGCGATTTAATTGCCAGTAATCACCCTATCAAGCAATTTTATCAAACCCTTGTTGGGGAGAAGAAGGAGTCATCAC
TCACAAATAATAACTTGCAGGCTGATGTTCCCACAGAAGCTCTGGCAGCATCTGTATTAACTCATTCAATCAAAGAGCAG
CTAGGTGCTGATATTCAGTGGAATGGGGCTGGAGCCTTTATTATTAACCAGAATAAAACAGATTTGAATGCAGCGGTGGC
CAGTCTGCCTTATGCCAACAATGAAACCAAATGGGTGCAAGGGCAAAAGGTTCCCACCAGAGCCAATGCCTTACTTGATA
AGTCAACACGGCAATATCGAGACCGCTCGCAACTTGATAAAGGTTACCGTTCATTTAAGCCAGCAGGTTGGCACCAATTG
TATCCTTTAAAAGGAAGTTATGACCATGCGGTGGATAGAGGGCATTTGCTAGGTTATGCTTTAATTGGCGGGCTGAAAGG
TTTTGATGCATCCACTAGCAATCCCAACAATATTGCTACTCAACTAAGCTGGGCCAATCAGGCGGATAAATCTTATGCAA
CAGGGCAAAATTACTATGAAGGCTTAGTACGTCGTGCTTTAGATAAGGGACATCGCGTCCGCTACCGTGTCACCCTGCTT
TATGATGGTGATAATTTACTAGCAAGCGGTAGCCATTTGGAGGCCAAATCAGCTGATGGCAGCTTGACTTTTAACGTGTT
TGTTCCAAATGTCCAACCAGGATTGACCGTTGATTATCGGACGGGACAGATAGCCATTAATCCCTGA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(95-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

56.818

91.667

0.521
  endA Streptococcus pneumoniae D39

56.818

91.667

0.521
  endA Streptococcus pneumoniae R6

56.818

91.667

0.521
  endA Streptococcus pneumoniae TIGR4

56.818

91.667

0.521

Multiple sequence alignment