Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   L1879_RS13025 Genome accession   NZ_CP091131
Coordinates   2714142..2716565 (+) Length   807 a.a.
NCBI ID   WP_258921398.1    Uniprot ID   A0AAW7CDR6
Organism   Heyndrickxia coagulans strain TM3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2709142..2721565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1879_RS13000 - 2709244..2709987 (+) 744 WP_258921397.1 SDR family NAD(P)-dependent oxidoreductase -
  L1879_RS13005 - 2710370..2710789 (+) 420 WP_013859764.1 Rrf2 family transcriptional regulator -
  L1879_RS13010 - 2710810..2711955 (+) 1146 WP_017552629.1 cysteine desulfurase family protein -
  L1879_RS13015 mnmA 2711971..2713086 (+) 1116 WP_013859762.1 tRNA 2-thiouridine(34) synthase MnmA -
  L1879_RS13020 - 2713463..2714131 (+) 669 WP_013859761.1 tetratricopeptide repeat protein -
  L1879_RS13025 recD2 2714142..2716565 (+) 2424 WP_258921398.1 ATP-dependent RecD-like DNA helicase Machinery gene
  L1879_RS13030 - 2716745..2717185 (-) 441 WP_258921399.1 YndM family protein -
  L1879_RS13035 - 2717345..2717557 (+) 213 WP_013859758.1 hypothetical protein -
  L1879_RS13040 - 2717584..2717706 (+) 123 WP_258922271.1 DUF3918 family protein -
  L1879_RS13045 - 2717945..2719036 (+) 1092 WP_258921400.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 807 a.a.        Molecular weight: 90706.83 Da        Isoelectric Point: 4.8244

>NTDB_id=647951 L1879_RS13025 WP_258921398.1 2714142..2716565(+) (recD2) [Heyndrickxia coagulans strain TM3]
MEKQHAMDLFQDQENFIKGKHLATIFHNEQNLYSVIRVRVEETNTGMEEKETVITGYFPRIHEQETYTFFGKMQEHPKFG
PQFQANRFQKDIPNTKQGVVEYLSSDLFNGIGKKTAERIVGVLGENAISKILENPAALDEVPKLAPEKAQLIHDTLVEHQ
GLERVMIGLAQYGFGPQIAMRIYQVYEDEALEMIAQNPYRLVDDIKGIGFGRADELGRQLGISGTHPHRIQAGCCYMLEM
ESMQHGHVYVLKEELAQDVKALLEEYQNVEIPVGLIENELVKLQEESKVIMEEDKVYLPSLYFSEKGIVSNIERIMSQTE
YAEQFPESEFLLALGSLEERLGVEYAPSQKEAIQKALMSPMMILTGGPGTGKTTVIKGIVELYGELHGVSLDPQTYKKDE
AFPIVLAAPTGRAAKRMAESTGLPAMTIHRLLGMTGMEDLDDSEERQVEGKLVIIDEMSMVDTWLANQLLKALPDEIQVI
MVGDEDQLPSVGPGQVLKDLLKSGAIPVVRLTDIYRQKDGSSIIELAHHVKNGRIPENIFQMQADRSFIRCSSGQVVEAV
EKVVKSAKRKGYTAKDIQVLAPMYRGPAGIDRLNSLLQNIFNPNENGARKELKHGDAVYRIGDKVLQLVNQPEHGVYNGD
IGEIVSLFTAKENTEKQDMLIVSFDGIEVTYTKPDFNQITLAYCCSIHKSQGSEFPVVILPVVRSYYRMLRRNLLYTAIT
RSKKILILLGEEPAFRMGVEREDDQKRKTTLCEKLAEALKTEQIEAGTETLLSLTEENWDQVDPMIGMEGITPYTFAEEK
QTAPQAD

Nucleotide


Download         Length: 2424 bp        

>NTDB_id=647951 L1879_RS13025 WP_258921398.1 2714142..2716565(+) (recD2) [Heyndrickxia coagulans strain TM3]
TTGGAAAAACAGCATGCGATGGATTTATTCCAGGACCAGGAAAATTTTATAAAAGGAAAGCATCTCGCGACCATTTTCCA
TAACGAGCAAAATTTGTATTCCGTCATCCGTGTGCGGGTTGAAGAGACCAATACCGGGATGGAAGAAAAGGAAACGGTCA
TTACCGGCTATTTTCCGCGCATCCATGAGCAGGAAACGTACACCTTTTTTGGAAAAATGCAGGAACACCCGAAATTCGGC
CCCCAATTCCAGGCAAACCGCTTTCAGAAGGACATTCCCAATACAAAGCAGGGTGTTGTTGAGTATCTTTCCAGTGATTT
ATTCAACGGCATCGGCAAAAAAACGGCGGAGCGGATCGTTGGCGTGCTCGGTGAAAATGCGATCAGCAAAATATTGGAAA
ATCCCGCCGCCCTTGACGAAGTACCAAAACTGGCGCCGGAAAAAGCACAGCTGATCCATGATACGTTGGTTGAACACCAG
GGGCTTGAACGTGTCATGATCGGGCTTGCGCAATACGGTTTCGGGCCGCAGATTGCGATGCGCATTTACCAGGTTTACGA
GGATGAGGCGCTCGAAATGATCGCACAAAATCCGTACCGGCTCGTCGATGATATCAAAGGCATCGGTTTCGGGCGGGCCG
ATGAACTCGGCCGGCAGCTCGGCATCAGCGGGACGCATCCGCACCGCATCCAGGCCGGCTGCTGTTACATGCTGGAAATG
GAAAGCATGCAGCACGGCCATGTGTACGTCCTGAAAGAAGAACTTGCGCAGGATGTCAAAGCCCTTTTGGAAGAGTACCA
GAATGTTGAAATCCCGGTCGGCCTGATTGAAAATGAGCTGGTAAAACTGCAGGAAGAGAGCAAAGTGATCATGGAAGAAG
ACAAAGTCTATCTTCCGTCCCTCTATTTTTCGGAAAAAGGAATCGTTTCCAATATTGAGCGGATAATGTCGCAAACCGAG
TATGCGGAACAGTTCCCGGAGTCGGAATTCCTGCTTGCCCTGGGCAGCCTTGAAGAACGGCTCGGCGTCGAGTATGCCCC
GTCGCAAAAGGAAGCCATCCAAAAAGCGCTGATGAGCCCGATGATGATTTTAACGGGCGGGCCCGGCACAGGGAAAACAA
CGGTCATTAAAGGGATTGTGGAACTGTACGGCGAATTGCACGGCGTTTCGCTTGACCCGCAAACCTATAAAAAAGATGAG
GCATTTCCGATTGTCCTCGCGGCGCCGACAGGGAGGGCCGCGAAAAGAATGGCGGAGTCAACCGGTCTGCCGGCAATGAC
AATCCACCGCCTGCTCGGCATGACCGGCATGGAGGACCTAGACGATTCAGAGGAACGGCAGGTAGAAGGCAAGCTCGTCA
TTATTGATGAAATGTCGATGGTCGATACATGGCTTGCAAACCAGCTGTTAAAGGCGCTGCCGGATGAAATCCAGGTCATT
ATGGTCGGGGATGAAGACCAGCTGCCGTCCGTCGGTCCGGGCCAGGTGCTGAAAGATTTATTGAAATCGGGTGCCATCCC
GGTTGTCAGGCTGACAGACATATACAGGCAGAAAGATGGTTCTTCGATTATTGAACTGGCCCACCATGTCAAAAATGGGC
GTATTCCGGAAAATATTTTTCAAATGCAGGCGGACCGTTCGTTTATCCGCTGTTCTTCCGGGCAGGTGGTAGAAGCGGTG
GAAAAAGTGGTGAAAAGCGCGAAACGGAAAGGCTATACGGCAAAAGACATCCAGGTGCTGGCGCCGATGTACAGGGGGCC
GGCCGGCATTGACCGCCTGAACAGCCTTTTGCAAAATATTTTTAATCCGAATGAGAACGGCGCCCGCAAAGAGCTGAAGC
ACGGGGACGCGGTTTACCGGATCGGCGATAAGGTGCTGCAGCTTGTCAACCAGCCGGAACACGGAGTGTATAACGGCGAT
ATCGGCGAGATTGTCTCCCTTTTTACCGCAAAAGAAAATACGGAAAAACAAGATATGCTCATCGTTTCTTTTGACGGGAT
TGAAGTGACGTATACGAAGCCTGATTTCAACCAGATTACGCTTGCGTATTGCTGTTCGATCCATAAATCGCAAGGAAGCG
AGTTCCCGGTAGTGATTTTGCCGGTTGTCCGCAGCTATTACCGGATGCTGCGCCGAAACTTGCTGTATACTGCGATCACA
AGAAGCAAAAAAATTTTAATTCTGCTTGGCGAAGAACCGGCTTTCCGGATGGGTGTGGAAAGGGAAGATGACCAAAAACG
GAAGACGACACTGTGTGAAAAACTGGCTGAAGCATTAAAAACGGAACAAATAGAGGCAGGGACGGAGACACTCCTGTCCC
TGACAGAAGAAAATTGGGACCAGGTCGACCCGATGATTGGCATGGAGGGCATTACCCCGTACACGTTCGCGGAAGAAAAG
CAAACGGCTCCCCAAGCGGATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-553)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-728)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.549

99.257

0.601