Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHA73_RS31425 Genome accession   NZ_CP107880
Coordinates   6985642..6986427 (-) Length   261 a.a.
NCBI ID   WP_267068935.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00483     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6980642..6991427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA73_RS31415 (OHA73_31415) - 6981469..6983484 (+) 2016 WP_327656693.1 IucA/IucC family siderophore biosynthesis protein -
  OHA73_RS31420 (OHA73_31420) - 6983525..6985546 (+) 2022 WP_327656694.1 ATP-dependent DNA helicase -
  OHA73_RS31425 (OHA73_31425) dinR/lexA 6985642..6986427 (-) 786 WP_267068935.1 transcriptional repressor LexA Regulator
  OHA73_RS31430 (OHA73_31430) nrdR 6986959..6987504 (+) 546 WP_266718929.1 transcriptional regulator NrdR -
  OHA73_RS31435 (OHA73_31435) - 6987641..6990535 (+) 2895 WP_327656695.1 vitamin B12-dependent ribonucleotide reductase -
  OHA73_RS31440 (OHA73_31440) - 6990652..6991191 (-) 540 WP_327656696.1 TerD family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28122.93 Da        Isoelectric Point: 8.0891

>NTDB_id=647950 OHA73_RS31425 WP_267068935.1 6985642..6986427(-) (dinR/lexA) [Streptomyces sp. NBC_00483]
MTTTADSATITAQGRAQGRLEPVHAMNDTAMSQEGPKPGRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=647950 OHA73_RS31425 WP_267068935.1 6985642..6986427(-) (dinR/lexA) [Streptomyces sp. NBC_00483]
GTGACCACGACCGCAGACAGTGCCACCATCACTGCCCAGGGCCGCGCCCAGGGCCGACTCGAGCCGGTGCATGCCATGAA
TGACACAGCCATGAGCCAGGAGGGCCCCAAGCCGGGGCGCTCCCTGCCCGGCCGGCCGCCAGGAATCCGCGCGGACAGCT
CGGGGCTCACGGATCGGCAGCGCCGCGTCATCGAGGTCATCCGGGACTCGGTGCAGCGTCGGGGGTACCCGCCGTCCATG
CGGGAGATCGGCCAGGCGGTCGGCCTGTCCAGCACGTCGTCGGTCGCGCACCAGCTGATGGCACTCGAGCGCAAGGGCTT
CCTGCGCCGGGATCCGCACCGCCCGCGCGCGTACGAGGTCCGTGGCTCGGACCAGCCCAGCGCGCAGCCCACGGACACCG
CGGGAAAGCCCGCGGCTTCGTATGTGCCCCTGGTGGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTC
GAGGACGTCTTCCCGCTGCCCCGGCAGCTCGTCGGTGACGGTGAGCTGTTCGTCCTGAAGGTCGTCGGCGACTCGATGAT
CGAGGCCGCGATCTGTGACGGGGACTGGGTCACGGTCCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCGTCGCCGCGA
TGCTCGACGGCGAGGCCACCGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTCTGGCTCCTGCCGCACAACTCCGCGTAC
CAGCCGATTCCCGGTGACGAGGCGACGATCCTCGGCAAGGTAGTGGCCGTTCTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

81.226

0.375