Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   L1879_RS12925 Genome accession   NZ_CP091131
Coordinates   2691233..2693596 (+) Length   787 a.a.
NCBI ID   WP_258921392.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain TM3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2686233..2698596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1879_RS12910 spoVB 2686755..2688299 (-) 1545 WP_041819186.1 stage V sporulation protein B -
  L1879_RS12915 - 2688402..2688722 (+) 321 WP_017552647.1 post-transcriptional regulator -
  L1879_RS12920 secDF 2688880..2691144 (+) 2265 WP_061575680.1 protein translocase subunit SecDF -
  L1879_RS12925 recJ 2691233..2693596 (+) 2364 WP_258921392.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  L1879_RS12930 - 2693587..2694108 (+) 522 WP_013859780.1 adenine phosphoribosyltransferase -
  L1879_RS12935 - 2694330..2696519 (+) 2190 WP_207368124.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  L1879_RS12940 dtd 2696534..2696974 (+) 441 WP_061567006.1 D-aminoacyl-tRNA deacylase -
  L1879_RS12945 - 2697157..2697597 (+) 441 WP_019720838.1 MarR family winged helix-turn-helix transcriptional regulator -
  L1879_RS12950 - 2697605..2698255 (+) 651 WP_013859775.1 HlyD family efflux transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 87778.74 Da        Isoelectric Point: 5.8301

>NTDB_id=647950 L1879_RS12925 WP_258921392.1 2691233..2693596(+) (recJ) [Heyndrickxia coagulans strain TM3]
MLQSRTRWRVPETDPEAAATISQQLNVSPLVSKLLVNRGITDVEEARSFLFHEGAEYHDPFLLHDMEKAAARIREAIKRE
EPVLVFGDYDADGVTSTAIMMAVLNDLGARAEFYIPDRFKEGYGPNEAAFRRAAEEGFQLIITVDTGIAAVHEAEVAREL
GIPLIITDHHEPGPVLPEAFAIVHPKHPESTYPFRELSGAGVAFKVAHALYGKVPEQLEELAAIGTVADLVPLLDENRLI
AANGIKRLRTTKRPGLAALCRCADIRQEEINEETIGFVLAPRLNAAGRLQHAAPAAELLMTENAEEAGMLAETIDGLNKE
RQKIVNEMTNEAIEMVEEEVEKGARVLVVGKEGWNAGVIGIAASRLTERFYRPAIVLSFDPETGLAKGSARSIDGFHMFN
ELSKCRDILPHFGGHPMAAGMTLSLSDVDELRRRLNEQAAALPDEMFVPVTNISAEISIEEAGMEAIREMALLSPFGTAN
PKPLLLLDGAYCPQIRAIGADGKHLKLALSKNGTTLDGVGFGLGNLAPHISPSACISVVGELSINEWNNIRKPQMMVKDI
KITNWQLFDFRGNRPLKQWVGHVPEDGQAFVVFQKETLRKLPLPDFSVRLVPVATMEEARAFDPANKNIVFLDLPPGPKM
MAALLEGGAPARIYAYFYHAGNHFFSTFPTREHFKWFYAFLAKRKTFNLKRHGDELAAYRGWSRNTIDFISQVFFELDFV
TIKDGFISLKAAKQKRDLKESFTYQKKLAQYQMEKDLLYSSFHELKMWFDQMIKPAVQYEEETAKWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=647950 L1879_RS12925 WP_258921392.1 2691233..2693596(+) (recJ) [Heyndrickxia coagulans strain TM3]
ATGCTGCAGTCAAGAACAAGGTGGCGGGTGCCGGAAACCGATCCGGAGGCAGCCGCAACGATCTCGCAACAATTGAACGT
TTCGCCACTTGTTTCAAAATTGCTTGTAAACCGCGGCATAACGGATGTTGAAGAAGCGCGGTCTTTTTTATTCCATGAAG
GGGCAGAATACCATGATCCGTTTTTGCTGCATGATATGGAAAAAGCAGCCGCCCGTATCCGCGAAGCGATTAAAAGGGAA
GAGCCGGTTCTCGTCTTCGGCGATTACGATGCGGACGGCGTAACGAGCACCGCGATCATGATGGCCGTTTTAAACGATCT
TGGCGCCCGTGCGGAATTTTATATCCCGGACCGGTTTAAAGAAGGGTACGGGCCAAATGAGGCGGCTTTCCGGCGGGCGG
CTGAAGAAGGATTCCAGCTGATCATTACCGTGGACACCGGTATTGCCGCTGTCCACGAAGCGGAAGTGGCCCGCGAACTC
GGGATCCCGCTCATTATTACGGACCATCACGAACCCGGGCCGGTGTTGCCGGAAGCTTTTGCCATCGTCCATCCGAAGCA
TCCGGAAAGTACATACCCGTTCCGGGAACTGTCGGGCGCAGGCGTCGCTTTTAAAGTCGCCCATGCGCTGTACGGCAAAG
TGCCGGAACAACTTGAAGAACTGGCCGCTATCGGGACGGTCGCGGATCTTGTGCCGCTTCTGGATGAAAACCGGCTGATT
GCCGCAAACGGCATCAAACGGCTGAGAACAACAAAGCGGCCGGGGCTTGCGGCGCTGTGCCGGTGTGCGGATATCCGCCA
GGAAGAGATTAACGAAGAAACAATCGGCTTTGTGCTCGCCCCCCGCTTAAATGCGGCCGGGCGCCTGCAACATGCGGCAC
CGGCAGCAGAACTGCTGATGACCGAAAACGCAGAAGAAGCCGGGATGCTCGCTGAAACGATTGACGGGCTCAATAAAGAA
CGGCAAAAAATCGTAAACGAGATGACAAATGAAGCAATCGAAATGGTGGAAGAAGAAGTGGAAAAGGGGGCGCGTGTCCT
TGTTGTCGGGAAAGAAGGATGGAATGCCGGCGTAATCGGCATTGCTGCCTCGCGCCTTACAGAACGTTTTTACCGGCCCG
CGATTGTGCTCAGCTTTGATCCGGAAACAGGGCTGGCAAAAGGATCGGCGCGCAGTATTGACGGCTTCCATATGTTTAAC
GAATTATCGAAATGCAGGGATATTTTGCCGCATTTTGGCGGGCATCCGATGGCGGCGGGGATGACGCTTTCTTTATCCGA
TGTGGATGAACTGCGGCGCCGGCTGAACGAACAGGCCGCGGCATTGCCGGATGAGATGTTTGTGCCGGTTACGAACATCA
GCGCTGAAATTTCCATAGAAGAAGCAGGGATGGAAGCGATCCGCGAAATGGCATTGCTCTCGCCGTTTGGCACGGCGAAT
CCGAAGCCGCTTCTGTTGCTGGATGGGGCCTATTGCCCGCAAATCCGGGCGATCGGCGCAGACGGGAAACATTTGAAATT
GGCGCTTTCCAAAAACGGCACAACGCTCGATGGAGTCGGCTTCGGGCTCGGAAATCTTGCCCCGCATATTTCCCCTTCTG
CCTGCATATCGGTTGTCGGGGAACTGTCCATCAATGAATGGAATAATATACGCAAGCCGCAAATGATGGTAAAGGACATC
AAAATCACAAACTGGCAATTGTTTGATTTCAGGGGCAACAGGCCTTTAAAGCAATGGGTCGGGCACGTCCCGGAAGATGG
CCAGGCTTTTGTTGTGTTCCAAAAAGAAACATTGCGGAAACTGCCGCTGCCGGATTTTTCCGTCCGCCTTGTGCCGGTGG
CGACAATGGAAGAGGCAAGGGCATTTGACCCGGCAAATAAAAATATTGTGTTTCTTGATCTTCCGCCAGGCCCGAAGATG
ATGGCGGCACTGCTTGAAGGCGGTGCGCCGGCCAGGATTTATGCGTATTTTTACCATGCCGGGAACCACTTTTTCAGCAC
GTTTCCGACGCGCGAACATTTTAAATGGTTTTACGCTTTTCTTGCAAAAAGGAAAACGTTCAACCTGAAGCGGCACGGGG
ATGAGCTGGCGGCTTACCGCGGATGGTCGAGAAATACGATCGATTTTATTTCGCAGGTGTTTTTTGAACTTGATTTTGTT
ACAATAAAGGATGGATTTATTTCCCTGAAAGCAGCTAAACAAAAACGCGATTTAAAGGAATCTTTTACGTATCAGAAAAA
ACTGGCACAATATCAAATGGAAAAGGACCTGCTGTACTCATCTTTCCATGAGCTGAAGATGTGGTTTGACCAAATGATCA
AGCCTGCTGTACAGTATGAGGAGGAAACAGCAAAATGGATTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(83-226)

RecJ OB domain (RecJ_OB)

(454-559)

DHHA1 domain (DHHA1)

(315-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.113

100

0.531