Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   L1999_RS22295 Genome accession   NZ_CP091110
Coordinates   4665798..4668161 (-) Length   787 a.a.
NCBI ID   WP_235740558.1    Uniprot ID   -
Organism   Neobacillus drentensis strain JC05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4660798..4673161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1999_RS22280 (L1999_22280) dtd 4662344..4662784 (-) 441 WP_235740556.1 D-aminoacyl-tRNA deacylase -
  L1999_RS22285 (L1999_22285) - 4662797..4664992 (-) 2196 WP_215043863.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  L1999_RS22290 (L1999_22290) - 4665295..4665807 (-) 513 WP_235740557.1 adenine phosphoribosyltransferase -
  L1999_RS22295 (L1999_22295) recJ 4665798..4668161 (-) 2364 WP_235740558.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  L1999_RS22300 (L1999_22300) secDF 4668503..4670767 (-) 2265 WP_235740559.1 protein translocase subunit SecDF -
  L1999_RS22305 (L1999_22305) - 4670903..4671199 (-) 297 WP_215043871.1 post-transcriptional regulator -
  L1999_RS22310 (L1999_22310) spoVB 4671346..4672896 (+) 1551 WP_235740560.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 87825.75 Da        Isoelectric Point: 5.3900

>NTDB_id=647798 L1999_RS22295 WP_235740558.1 4665798..4668161(-) (recJ) [Neobacillus drentensis strain JC05]
MLKSKTNWIVRKTDHKLAQMLVNELKITPLVASLLVNRGLDTVDSARYFLFGKDGFHDPYLLIGMETAVERIKEAIDKQE
PILIFGDYDADGVSSTSVLMITLRDLGANVQFYIPNRFREGYGPNESAFRQAAENGIKLIITVDTGIAAVHEAAVAKELG
LDLIITDHHEPGPVLPEALAIIHPKLPDSTYPFRELAGVGVAFKLAHALYGEVPDHLFEIAVIGTIADLVSLKGENRLIA
KKGLEKLRVTQNIGLRAILKVAGVDLKAINEETIGFTIAPRINAVGRLEDADLAVHLLLTEDPEEAQSLAEEMDALNKTR
QEIVNTITAEAIAEVEKNYPIETNKVLVIGKEGWNPGVIGIVASRLVEKFYRPTIVLNFDPDKGVAKGSARSILGYDLFK
NLSTCRELLPHFGGHPMAAGMTLKLEDVAELRERLNRLADEQLTDEHLIPLTQLDEKLHLQDISLSSLDELSLLAPFGMD
NPKPKVLIDNVAITSMRKIGSGQNHLKVLVNEEGSTLDGVGFGLGALADQISPVSKISLIGELSINEWNNNRKPQIFIHD
MAVHSWQLFDLRGQKRADHFQTIVPAENRKIIIFNQEHLEKINPELRSETILIQTIEDAKSFDGLGANIALVDFPPTKDH
VKELVSGKEPARIYTYFYKEASDYFSTLPTRDHFKWFYAFLLKKGPIDLKLHGETIAKHRGWSQETIKFMSKVFSELDFV
TINNGFITLNTGAPKRDLTDSQTYQTKQAQYALERELLFSSFQELKGWFDQVIQGSVESEEAIKEWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=647798 L1999_RS22295 WP_235740558.1 4665798..4668161(-) (recJ) [Neobacillus drentensis strain JC05]
TTGTTAAAATCAAAAACTAACTGGATTGTTCGCAAAACTGATCATAAACTTGCCCAAATGCTTGTAAATGAATTGAAAAT
AACACCTCTGGTTGCATCCCTGCTTGTAAACCGTGGACTGGATACCGTAGATTCTGCTCGGTATTTTTTATTTGGAAAAG
ATGGGTTTCATGATCCATATTTACTTATAGGAATGGAAACAGCGGTTGAACGAATTAAAGAGGCGATTGATAAACAAGAA
CCTATTCTTATTTTTGGGGATTACGATGCCGATGGAGTAAGCAGCACCTCGGTGTTAATGATTACACTTCGCGATTTAGG
GGCAAATGTCCAATTTTATATCCCTAATCGTTTTAGAGAAGGATATGGACCAAATGAATCTGCTTTCCGTCAAGCGGCGG
AAAATGGTATTAAATTGATTATCACTGTAGATACAGGAATAGCGGCTGTGCATGAGGCAGCTGTTGCAAAAGAACTTGGC
CTGGACTTAATTATTACCGATCACCATGAACCTGGACCGGTTTTACCAGAGGCACTCGCCATCATTCATCCCAAACTGCC
TGATAGCACTTATCCATTTCGCGAACTGGCTGGAGTCGGTGTCGCTTTTAAACTGGCCCATGCCTTATATGGGGAAGTTC
CCGATCATTTATTTGAAATTGCCGTCATCGGAACAATTGCTGACTTAGTGTCGTTGAAAGGCGAAAACCGCCTGATCGCC
AAAAAAGGTCTTGAAAAACTGAGAGTAACCCAAAATATTGGCCTCCGAGCTATTTTAAAAGTTGCTGGGGTTGACCTTAA
GGCAATTAATGAAGAAACGATTGGGTTTACCATTGCACCACGAATTAATGCGGTCGGCAGGCTCGAAGATGCAGATTTAG
CCGTTCATTTGTTATTAACAGAAGACCCGGAGGAAGCTCAAAGTCTAGCTGAAGAAATGGATGCGTTAAACAAAACAAGG
CAGGAGATCGTCAACACCATTACGGCCGAAGCAATCGCTGAGGTTGAAAAAAACTACCCGATTGAGACCAATAAAGTATT
GGTGATTGGGAAAGAAGGCTGGAATCCCGGTGTTATTGGAATTGTGGCTTCAAGACTTGTCGAAAAGTTCTATCGGCCAA
CCATCGTGCTAAATTTTGACCCGGACAAAGGTGTCGCTAAGGGTTCGGCAAGAAGTATTCTCGGATATGATTTATTTAAA
AATTTATCGACATGCAGAGAACTTCTGCCCCATTTTGGCGGACATCCGATGGCAGCTGGGATGACATTAAAACTTGAAGA
CGTTGCTGAACTCCGTGAGCGCCTTAACCGCCTCGCTGACGAGCAGCTGACAGATGAACATTTAATCCCATTAACGCAGC
TTGATGAGAAGTTACATCTTCAAGATATCAGTTTATCTTCCTTAGATGAACTAAGTTTGCTCGCCCCGTTTGGCATGGAT
AACCCGAAGCCAAAAGTGTTAATCGATAATGTGGCGATTACGAGTATGAGAAAGATTGGCAGTGGACAAAATCATTTAAA
GGTCTTAGTAAATGAAGAAGGCTCCACCCTTGATGGTGTAGGGTTTGGTTTAGGTGCGCTTGCTGACCAAATTTCTCCTG
TCTCAAAAATTTCATTAATTGGAGAATTATCTATTAATGAATGGAATAATAATCGTAAACCACAAATCTTTATTCACGAT
ATGGCTGTCCATTCGTGGCAATTATTTGATTTGCGCGGACAAAAACGAGCGGATCACTTCCAAACGATTGTACCTGCTGA
AAACAGGAAAATTATTATTTTTAATCAAGAGCACCTTGAAAAAATAAACCCAGAGTTGCGGTCTGAGACGATCCTTATTC
AAACTATTGAAGATGCCAAATCCTTTGATGGATTAGGAGCCAATATTGCTTTAGTTGATTTCCCGCCAACCAAGGATCAT
GTAAAAGAATTAGTATCTGGAAAAGAGCCTGCAAGGATTTATACTTATTTTTATAAAGAAGCAAGCGATTATTTTTCCAC
TCTGCCAACCCGCGACCACTTCAAATGGTTCTATGCCTTTCTGCTAAAAAAAGGCCCAATCGACTTGAAGCTTCATGGTG
AAACCATAGCGAAACATCGCGGCTGGTCGCAGGAAACGATTAAATTTATGTCAAAGGTGTTTTCTGAACTAGATTTTGTT
ACAATAAACAATGGATTTATCACTTTAAATACGGGCGCGCCAAAGCGTGACCTGACTGATTCCCAAACTTATCAAACAAA
ACAGGCCCAGTATGCTCTTGAAAGAGAATTATTGTTTTCCTCCTTTCAAGAATTAAAAGGCTGGTTCGATCAAGTCATTC
AAGGATCGGTTGAATCTGAGGAGGCAATTAAAGAATGGATTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-224)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-769)

DHHA1 domain (DHHA1)

(314-437)

RecJ OB domain (RecJ_OB)

(455-560)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.98

99.873

0.559