Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   L1999_RS22210 Genome accession   NZ_CP091110
Coordinates   4645926..4648337 (-) Length   803 a.a.
NCBI ID   WP_235740544.1    Uniprot ID   -
Organism   Neobacillus drentensis strain JC05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4640926..4653337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1999_RS22190 (L1999_22190) - 4643869..4644933 (-) 1065 WP_235740542.1 AI-2E family transporter -
  L1999_RS22195 (L1999_22195) - 4645033..4645167 (-) 135 WP_215043833.1 YrzQ family protein -
  L1999_RS22200 (L1999_22200) - 4645222..4645413 (-) 192 WP_098529891.1 hypothetical protein -
  L1999_RS22205 (L1999_22205) - 4645425..4645901 (-) 477 WP_235740543.1 PRC-barrel domain-containing protein -
  L1999_RS22210 (L1999_22210) recD2 4645926..4648337 (-) 2412 WP_235740544.1 ATP-dependent RecD-like DNA helicase Machinery gene
  L1999_RS22215 (L1999_22215) - 4648369..4649022 (-) 654 WP_235740545.1 tetratricopeptide repeat protein -
  L1999_RS22220 (L1999_22220) mnmA 4649127..4650245 (-) 1119 WP_235740546.1 tRNA 2-thiouridine(34) synthase MnmA -
  L1999_RS22225 (L1999_22225) - 4650282..4651424 (-) 1143 WP_235740547.1 cysteine desulfurase family protein -
  L1999_RS22230 (L1999_22230) - 4651534..4651953 (-) 420 WP_235740548.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 803 a.a.        Molecular weight: 90724.40 Da        Isoelectric Point: 4.7991

>NTDB_id=647797 L1999_RS22210 WP_235740544.1 4645926..4648337(-) (recD2) [Neobacillus drentensis strain JC05]
MEKQDTLDLFAEQGKFVKGRPIVTIFHNEQNLYTVLRIRVDETNDQYDDKEAVVTGYFPKIHEQETYVFFGEFKEHPKFG
VQFHTQHFRKDMPQTKQGVIAYLSGEMFKGIGKKTAENIVETLGENAISKILNQPSLLDSIPKLPPEKAKMLYDTLMEHQ
GLEQVMVALNQYGFGPQISMRIYQAYKDETLSVIQKNPYQLVEDIEGIGFGRADELGYQLGISGNHPDRIKAACLYTLEN
ESMQTGHVYLHAETLLEQVKSLLEENKRDQIDFTDISGELIKLEEEGKIIGEEKRIYLPSLFFAEKGLVTNINRILQQTE
YREQFPESEFLLALGGLEERLGVQYAPSQKEAIQTALMSPMLILTGGPGTGKTTVIKGIVELYGELHGCSLEPKDYFKKD
EPFPILLAAPTGRAAKRMTESTGLPAVTIHRLLGFNGTEGFDRDEVSPLEGKILIVDETSMLDIWLANQLFKALPEHIQV
IMVGDEDQLPSVGPGQVLKDLLQSQRIPTVRLTDIYRQAEGSSIIELAHDIKKGYLPANVTAKQSDRSFIRCSTAQVAQV
VEKVAQNAKNKGYTAKDIQVLAPMYRGPAGIDRLNVLLQEIFNPNPDGKRKEIAFGDVKYRIGDKVLQLVNQPEDNVFNG
DIGEIISIIYAKENTEKQDMIYISFEGTEVEYTRQDLNQITHAYCCSVHKSQGSEFPIVIMPITRSYYRMLQRNLIYTAI
TRSKQSLIICGEEEAFRLGVERADELQRQTTLCQKLQESITIGAQLEEDPSSELSYEEQLMQVHPMVGMENVTPYDFLTN
DGN

Nucleotide


Download         Length: 2412 bp        

>NTDB_id=647797 L1999_RS22210 WP_235740544.1 4645926..4648337(-) (recD2) [Neobacillus drentensis strain JC05]
ATGGAAAAACAAGACACCCTTGATTTATTCGCTGAGCAAGGAAAATTCGTAAAGGGAAGACCGATTGTAACCATTTTCCA
TAACGAGCAAAACCTCTATACGGTCCTAAGAATCCGTGTCGATGAAACCAATGATCAATATGATGACAAAGAAGCAGTAG
TGACGGGATATTTTCCAAAAATTCATGAACAAGAAACATATGTGTTTTTTGGAGAATTTAAAGAACATCCCAAGTTTGGG
GTTCAGTTTCATACCCAGCATTTTCGGAAGGATATGCCGCAGACCAAACAAGGGGTTATTGCTTACTTATCAGGTGAAAT
GTTTAAAGGCATCGGGAAAAAGACAGCGGAAAACATCGTTGAGACACTTGGCGAGAATGCCATCTCCAAGATTCTCAATC
AGCCATCCTTACTCGATTCCATTCCAAAGCTTCCTCCTGAAAAAGCGAAAATGCTGTATGATACCTTAATGGAACATCAA
GGGCTTGAACAGGTAATGGTAGCCCTGAACCAATATGGATTTGGACCGCAAATATCGATGCGCATTTATCAAGCGTATAA
AGACGAAACGCTATCGGTTATTCAAAAAAACCCCTATCAGCTTGTTGAGGATATCGAGGGGATTGGATTTGGCCGGGCAG
ATGAACTAGGTTACCAGCTGGGAATCTCAGGAAATCACCCTGACCGGATAAAGGCAGCCTGCCTTTATACCCTCGAAAAT
GAAAGCATGCAAACAGGTCATGTTTATTTACATGCAGAGACTTTACTCGAGCAGGTCAAGTCACTTTTAGAAGAGAACAA
ACGCGATCAAATTGACTTTACGGATATCTCTGGCGAGCTGATTAAGCTTGAAGAAGAAGGAAAGATTATTGGTGAAGAAA
AACGCATTTATCTGCCTTCCTTATTTTTTGCAGAAAAAGGGCTAGTTACAAATATCAACCGAATTTTGCAGCAAACGGAA
TATCGTGAGCAATTTCCTGAGTCTGAATTCCTTCTGGCATTAGGCGGCTTAGAGGAGCGTCTGGGTGTACAGTATGCCCC
GTCCCAAAAAGAAGCTATTCAAACGGCACTCATGTCGCCCATGCTCATTTTAACGGGCGGTCCTGGTACCGGGAAAACAA
CGGTTATTAAAGGAATTGTTGAGCTATACGGTGAACTTCACGGCTGTTCACTCGAACCAAAGGATTATTTTAAAAAAGAT
GAACCGTTTCCGATTTTACTAGCAGCGCCGACAGGAAGAGCCGCAAAACGAATGACCGAATCCACAGGTCTGCCTGCCGT
AACGATTCACCGCTTACTTGGCTTTAATGGGACAGAAGGGTTTGACCGTGATGAAGTCAGTCCGCTTGAGGGGAAAATAT
TAATTGTCGATGAGACTTCGATGCTCGATATCTGGTTAGCCAATCAATTATTTAAGGCCTTGCCAGAACATATCCAAGTC
ATCATGGTAGGGGACGAGGACCAGCTTCCATCCGTTGGACCTGGACAAGTCTTAAAGGACTTGCTCCAATCACAAAGGAT
TCCAACCGTCCGCCTGACCGATATTTACCGTCAGGCCGAGGGTTCTTCCATTATTGAACTAGCCCATGATATAAAAAAAG
GCTATCTTCCAGCAAATGTAACAGCAAAGCAGTCAGACCGTTCTTTTATTCGATGTTCAACCGCACAAGTTGCCCAAGTT
GTCGAAAAAGTGGCCCAGAACGCCAAGAATAAAGGCTATACCGCGAAGGATATTCAAGTGCTGGCACCGATGTACCGGGG
TCCGGCCGGAATTGACCGATTAAATGTCTTATTACAGGAAATATTTAATCCTAATCCGGATGGCAAGCGCAAGGAAATAG
CGTTTGGCGACGTCAAATACCGGATTGGAGATAAGGTGCTTCAACTTGTAAACCAGCCGGAAGACAATGTTTTTAACGGT
GATATTGGAGAAATTATTTCCATTATCTATGCCAAAGAAAATACTGAAAAACAAGATATGATCTATATTTCATTTGAAGG
AACAGAAGTGGAATATACCAGACAGGACTTAAATCAGATTACACATGCCTATTGCTGTTCGGTTCATAAGTCGCAGGGCA
GTGAGTTTCCGATTGTTATTATGCCTATCACGAGAAGTTATTACAGAATGCTGCAAAGGAATCTAATCTATACGGCCATA
ACTAGGAGTAAACAATCGTTGATTATTTGCGGTGAGGAAGAGGCCTTCAGGCTGGGGGTCGAACGGGCAGATGAGCTTCA
AAGACAAACGACACTCTGCCAAAAGCTTCAGGAATCGATTACAATTGGCGCTCAACTAGAAGAAGATCCTTCTAGTGAAT
TATCCTATGAGGAGCAGTTAATGCAAGTCCATCCTATGGTTGGAATGGAAAACGTTACACCTTATGATTTTTTAACAAAT
GACGGAAACTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-664)

AAA domain (AAA_30)

(345-554)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.085

98.506

0.621