Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHN37_RS14880 Genome accession   NZ_CP107878
Coordinates   3278033..3279964 (+) Length   643 a.a.
NCBI ID   WP_266513882.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00485     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3273033..3284964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN37_RS14865 (OHN37_14880) - 3274352..3274657 (+) 306 WP_266513874.1 YtxH domain-containing protein -
  OHN37_RS14870 (OHN37_14885) - 3274742..3276184 (+) 1443 WP_266513877.1 FGGY family carbohydrate kinase -
  OHN37_RS14875 (OHN37_14890) rcrP 3276300..3278033 (+) 1734 WP_266513880.1 ABC transporter ATP-binding protein Regulator
  OHN37_RS14880 (OHN37_14895) rcrQ 3278033..3279964 (+) 1932 WP_266513882.1 ABC transporter ATP-binding protein Regulator
  OHN37_RS14885 (OHN37_14900) - 3280019..3281320 (-) 1302 WP_266513885.1 RNA polymerase sigma factor -
  OHN37_RS14890 (OHN37_14905) dnaG 3281814..3283712 (-) 1899 WP_266513888.1 DNA primase -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69600.99 Da        Isoelectric Point: 6.2655

>NTDB_id=647710 OHN37_RS14880 WP_266513882.1 3278033..3279964(+) (rcrQ) [Streptomyces sp. NBC_00485]
MAGPMARMMGQGGGPDSRSLDFKVSGRRLIARFKPERLTIYALLVCVVVSVGLNVIGPKILGRATDLVFAGIIGRQMPAG
ATKEQVLASMRERGQGQVADMLRSTDFTPGKGIDFGAVGNVLLIALCTFLAAGLLMAVATRLVNRAVNRTMYRMREDVQA
KLSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSALTVIGVLAVMFWVSWLLALVALVTVPLSFVVATRVG
KRSQPHFVQQWRSTGKLNAHVEEMYTGHTLVKVFGRQEESAQQFAEQNDALYEAGFKAQFNSGVMQPLMMFVSNLNYVLV
AVVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPVRGERPAELRGLVEL
DNISFSYDPDKPLIEHLSLKAEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDIASMSRDELRAGIGMVLQD
TWLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPTILVLD
EATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGTHADLLAADGAYGRLYKAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=647710 OHN37_RS14880 WP_266513882.1 3278033..3279964(+) (rcrQ) [Streptomyces sp. NBC_00485]
ATGGCCGGGCCGATGGCGCGGATGATGGGCCAGGGCGGCGGCCCCGACAGCCGTTCGTTGGACTTCAAGGTGTCGGGCAG
GCGCCTGATCGCCCGGTTCAAACCGGAACGTCTCACGATCTACGCGCTGCTGGTCTGCGTGGTGGTGAGCGTCGGCCTGA
ACGTGATCGGGCCGAAGATCCTCGGCAGGGCCACCGACCTCGTCTTCGCCGGCATCATCGGGCGTCAGATGCCGGCCGGG
GCCACCAAGGAACAGGTTCTCGCGTCGATGCGGGAGCGGGGGCAGGGCCAGGTCGCCGACATGCTCCGCAGCACCGACTT
CACGCCCGGCAAGGGCATCGACTTCGGCGCCGTGGGCAACGTACTGCTGATCGCGCTGTGTACGTTCCTCGCCGCCGGTC
TGCTGATGGCGGTGGCGACGCGGCTGGTGAACCGGGCCGTCAACCGGACCATGTACCGGATGCGTGAGGACGTGCAGGCG
AAGCTGTCGCGGCTGCCGTTGTCGTACTTCGACAAACGACAGCGCGGTGAGGTGCTGTCCCGGGCGACGAACGACATCGA
CAACATCGGCCAGACACTGCAGCAGTCGATGGGCCAGCTCATCAACTCGGCGCTGACCGTCATCGGCGTGCTCGCGGTGA
TGTTCTGGGTGTCCTGGCTGCTGGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGTTCGTCGTCGCCACGCGCGTCGGC
AAGCGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCGACCGGCAAGCTGAACGCCCACGTCGAGGAGATGTACACCGG
CCACACGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGG
CCGGGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTCAACTACGTGCTGGTG
GCGGTCGTCGGTGGTCTGCGGGTCGCGTCCGGCGCGCTGTCGATCGGTGACGTACAGGCCTTCATCCAGTACTCGCGGCA
GTTCTCGATGCCGCTGACACAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCCGAGCGGATCTTCG
AACTCCTGGACGCGGAGGAGCAGGAGGCGGATCCGGTGCGCGGCGAGCGGCCCGCGGAGCTGCGGGGGCTGGTGGAGCTG
GACAACATCTCCTTCAGCTACGACCCCGACAAGCCGCTGATCGAGCACCTGTCCCTGAAGGCGGAACCCGGGCACACCGT
CGCGATCGTCGGCCCGACGGGAGCCGGCAAGACCACGCTGGTCAATCTGCTCATGCGGTTCTACGACGTGTCCGGCGGGC
GTATCACTCTCGACGGCGTCGACATCGCGAGCATGTCCCGGGACGAACTGCGGGCCGGGATCGGCATGGTGCTGCAGGAC
ACCTGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGCGCCTCGCGGGAGGTCACCCGGGGCGAGATCGAGGA
GGCGGCGCGGGCCGCGCACGCCGACCGGTTCGTGCGCACGCTTCCCGACGGCTACGACACCGTGATCGACGACGAGGGCT
CGGGCGTCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTTTCGGACCCGACGATCCTGGTGCTCGAC
GAGGCGACGAGTTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGCAGGACGTC
GTTCGTGATCGCGCACCGGCTGTCGACCATCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGGTCGATCGTGGAAC
AGGGCACCCACGCGGACCTGTTGGCGGCCGACGGGGCGTACGGGCGGCTGTACAAGGCGCAGTTCGCCCAGGCGGTGGCC
GAGGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(43-352)

ABC transporter (ABC_tran)

(415-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.871

92.846

0.379