Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG250_RS29760 Genome accession   NZ_CP107877
Coordinates   6898844..6900577 (-) Length   577 a.a.
NCBI ID   WP_327729808.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00487     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6893844..6905577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG250_RS29750 (OG250_29800) - 6895360..6896682 (+) 1323 WP_327729806.1 RNA polymerase sigma factor -
  OG250_RS29755 (OG250_29805) rcrQ 6896910..6898844 (-) 1935 WP_327729807.1 ABC transporter ATP-binding protein Regulator
  OG250_RS29760 (OG250_29810) rcrP 6898844..6900577 (-) 1734 WP_327729808.1 ABC transporter ATP-binding protein Regulator
  OG250_RS29765 (OG250_29815) - 6900794..6902248 (-) 1455 WP_327729809.1 FGGY family carbohydrate kinase -
  OG250_RS29770 (OG250_29820) - 6902318..6902623 (-) 306 WP_326582959.1 YtxH domain-containing protein -
  OG250_RS29790 (OG250_29840) - 6903672..6903953 (-) 282 Protein_5881 transposase -
  OG250_RS29795 (OG250_29845) - 6904008..6904685 (+) 678 WP_327729810.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62997.20 Da        Isoelectric Point: 5.7639

>NTDB_id=647665 OG250_RS29760 WP_327729808.1 6898844..6900577(-) (rcrP) [Streptomyces sp. NBC_00487]
MLIRLLRSHLRPYRTPITLLVLLQFVQTCATLYLPTLNADIIDEGVVEGDTGYILSFGALMIGISLVQVVCNIGAVYYGA
RTAAAVGRDIRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLVLMTFTLVVSAPIMCVGGIVLALGLDVPLSGV
LLAVVPVLGVSVSLIVRRLRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDDYEKDRFRKANVELTDVSLGTGRMLAL
MFPIVMTVINLSSIVVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMMPRAEVCAERIQEVLDTGTSVVP
PAEPVRELRRHGFLEVRGAGFRYPGAEEPVLRSIEVAARPGETTAVIGSTGSGKSTLLGLVPRLFDVTEGEVLVDGVDVR
TLDPKLLARTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVERLESGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETADATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=647665 OG250_RS29760 WP_327729808.1 6898844..6900577(-) (rcrP) [Streptomyces sp. NBC_00487]
GTGCTCATACGATTGCTGAGAAGTCATCTTCGTCCCTACCGGACACCGATCACCCTGTTGGTGCTGCTGCAGTTCGTGCA
GACGTGCGCCACGCTCTACCTGCCCACGCTGAACGCGGACATCATCGACGAGGGCGTGGTGGAGGGGGACACGGGTTACA
TCCTGTCCTTCGGCGCGCTGATGATCGGTATCTCGTTGGTGCAGGTCGTCTGCAACATCGGGGCCGTGTACTACGGCGCC
CGCACCGCCGCGGCGGTCGGCCGGGACATCCGGGCCGCCGTGTTCGACCGGGTGCAGTCGTTCTCGGCGCGTGAGGTCGG
TCACTTCGGTGCTCCGTCGCTGATCACGCGGACGACGAACGATGTGCAGCAGGTGCAGATGCTGGTGCTCATGACGTTCA
CGCTGGTGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCGTGCTGGCGCTGGGGCTGGACGTGCCGTTGTCGGGGGTG
CTCCTCGCCGTCGTCCCGGTGCTCGGTGTTTCCGTCAGCCTGATCGTGCGCCGGCTGCGCCCCCTGTTCCGCACGATGCA
GGAGCGGCTGGACACCGTGAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGGGTCATCCGGGCCTTCGTGCGGGACG
ACTACGAGAAGGATCGGTTCCGGAAGGCGAACGTCGAGCTGACGGACGTATCCCTGGGAACCGGGCGGATGCTCGCGCTG
ATGTTCCCGATCGTGATGACGGTCATCAACCTCTCGTCGATCGTGGTGGTGTGGTTCGGTGCCCATCGGATCGACAGCGG
CGGGATGCAGATCGGCGCGCTCACCGCTTTCCTCGCCTATCTGATGCAGATCGTCATGGCTGTGATGATGGCCACGTTCA
TGTTCATGATGATGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTGGACACCGGGACGAGTGTGGTGCCG
CCGGCCGAGCCCGTACGGGAGCTGCGGCGGCACGGGTTCCTCGAGGTACGGGGTGCGGGCTTCCGCTATCCGGGTGCCGA
GGAGCCGGTGCTCCGGTCGATCGAGGTGGCGGCGCGGCCCGGTGAGACGACCGCCGTCATCGGGTCCACGGGCAGCGGCA
AGTCGACGCTCCTCGGGCTGGTCCCCCGGCTGTTCGACGTCACCGAGGGCGAGGTGCTGGTGGACGGCGTCGACGTACGG
ACGCTCGATCCGAAGCTGCTGGCCAGGACGGTGAGCCTGGTGCCGCAGAAGCCGTACCTCTTCTCGGGGACCGTGGCGAC
GAACCTGCGGTACGGCAATCCGGACGCCACCGACGAGGAGTTGTGGCACGCGTTGGAGGTGGCGCAGGCCAAGGAGTTCG
TCGAGCGGCTGGAGAGCGGGCTGGACTCGCCCATCGCGCAGGGCGGGACGAACGTGTCCGGCGGGCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGCCCGGAGATCTATCTGTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACCGA
CGCCGCCCTGCGCGCGGCGCTGGCGCGGGAGACCGCCGACGCGACCGTCGTGATCGTGGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTCGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGACGCCACCACGAGCTGATGGCCGACAAC
GAGACCTACCGGGAGATCGTCCTCTCCCAGCTCACGGAAGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.832

100

0.392