Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHA87_RS17270 Genome accession   NZ_CP107867
Coordinates   3768102..3770027 (+) Length   641 a.a.
NCBI ID   WP_327670269.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00493     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3763102..3775027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA87_RS17255 (OHA87_17270) - 3764380..3764691 (+) 312 WP_327670266.1 YtxH domain-containing protein -
  OHA87_RS17260 (OHA87_17275) - 3764760..3766190 (+) 1431 WP_327670267.1 FGGY family carbohydrate kinase -
  OHA87_RS17265 (OHA87_17280) rcrP 3766363..3768102 (+) 1740 WP_327670268.1 ABC transporter ATP-binding protein Regulator
  OHA87_RS17270 (OHA87_17285) rcrQ 3768102..3770027 (+) 1926 WP_327670269.1 ABC transporter ATP-binding protein Regulator
  OHA87_RS17275 (OHA87_17290) - 3770136..3771422 (-) 1287 WP_327670270.1 RNA polymerase sigma factor -
  OHA87_RS17280 (OHA87_17295) dnaG 3771576..3773483 (-) 1908 WP_327663483.1 DNA primase -
  OHA87_RS17285 (OHA87_17300) - 3773539..3774804 (-) 1266 WP_327663482.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 68627.79 Da        Isoelectric Point: 5.0257

>NTDB_id=647438 OHA87_RS17270 WP_327670269.1 3768102..3770027(+) (rcrQ) [Streptomyces sp. NBC_00493]
MSGPMGRMAAGAPGSRSMDFKGSGKRLLKRLAAHRTAVVGVLVSVVISVGLSVVGPKILGHATDLLFGGIIGGQMPAGQT
KEQVLDGLRAKGDGGMADMLGGVDFTPGQGVDFGAIGEVLLLGLAVFAVAGLTMMIGTRLANRTINLAVGQLRAELQGKL
SRLPLSYYDQQKRGEVLSRATNDMDNLGQTLQQTMGQMLNSLLTVIGVLAMMFWISWLLALVALVTVPLSVFVAAKVGKR
SQPQFVQQWRATGALNAHIEEMYTGHNLVKVFGRQDESAELFAEQNDALYEASFKAQFNSGIMQPLMFFISNLNYVLVAV
VGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVATAERVFELLDAEEQSAEPVPGEKPDNLRGHVEFEH
VAFRYEKDKPLIEDLSLTADPGHTVAIVGPTGAGKTTLVNLLLRFYEVTGGRITLDGVDIAKMSREELRAGIGMVLQDTW
LFGGTIAENIAYGAPKDVTREEVEEAAKAAHADRFIRTLPDGYDTVLDDEGTGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLASGRTSFVIAHRLSTIRDADTILVMENGAIVEQGSHEALVAADGAYQRLYEAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=647438 OHA87_RS17270 WP_327670269.1 3768102..3770027(+) (rcrQ) [Streptomyces sp. NBC_00493]
ATGAGTGGGCCCATGGGGCGGATGGCGGCCGGTGCGCCCGGTTCGCGTTCGATGGACTTCAAGGGGTCGGGCAAGCGGCT
CCTGAAGCGGCTCGCCGCGCACCGCACGGCGGTGGTCGGAGTACTCGTCTCCGTCGTGATCAGCGTCGGCCTGTCGGTGG
TCGGGCCGAAGATCCTCGGCCACGCCACCGACCTGCTGTTCGGCGGGATCATCGGCGGGCAGATGCCGGCCGGGCAGACC
AAGGAGCAGGTCCTCGACGGCCTGCGCGCCAAGGGCGACGGTGGCATGGCCGACATGCTCGGCGGCGTCGACTTCACGCC
GGGACAGGGCGTCGACTTCGGCGCGATCGGGGAGGTGCTGCTGCTCGGCCTCGCCGTGTTCGCGGTCGCGGGCCTGACGA
TGATGATCGGCACCCGGCTCGCCAACCGGACGATCAACCTGGCCGTGGGGCAGCTCCGCGCCGAGCTTCAGGGCAAGCTG
TCGCGGCTGCCGCTGTCGTACTACGACCAGCAGAAGCGCGGCGAGGTGCTGAGCCGGGCGACCAACGACATGGACAACCT
CGGGCAGACGCTCCAGCAGACGATGGGGCAGATGCTCAACTCGCTGCTGACCGTCATCGGCGTGCTCGCGATGATGTTCT
GGATCTCCTGGCTGCTCGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGGTGTTCGTCGCGGCGAAGGTCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGCGGGCGACCGGCGCGCTCAACGCGCACATCGAGGAGATGTACACCGGCCACAA
CCTGGTGAAGGTGTTCGGGCGGCAGGACGAGTCGGCGGAGCTGTTCGCCGAACAGAACGACGCGCTGTACGAGGCGTCGT
TCAAGGCGCAGTTCAACAGCGGCATCATGCAGCCGCTGATGTTCTTCATCTCGAACCTGAACTATGTGCTGGTCGCTGTC
GTCGGCGGGTTGAGGGTGGCCAGTGGGTCGCTCTCCATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGCCAGTTCTC
GATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCGACGGCCGAGCGGGTCTTCGAACTGC
TCGACGCGGAGGAGCAGTCGGCGGAGCCGGTGCCCGGCGAGAAGCCGGACAACCTGCGCGGGCACGTCGAGTTCGAGCAC
GTGGCCTTCCGCTACGAGAAGGACAAGCCGCTCATCGAGGACCTGTCGCTCACCGCCGACCCCGGTCACACGGTGGCGAT
CGTCGGGCCGACGGGCGCGGGCAAGACGACCCTCGTCAATCTGCTGCTGCGGTTCTACGAGGTCACGGGCGGGCGCATCA
CGCTCGACGGCGTCGACATCGCGAAGATGTCGCGGGAGGAGCTGCGCGCCGGGATCGGCATGGTGCTCCAGGACACCTGG
CTGTTCGGCGGGACCATCGCGGAGAACATCGCGTACGGGGCCCCGAAGGACGTCACCCGCGAGGAGGTCGAGGAGGCGGC
GAAGGCCGCGCACGCCGACCGGTTCATCCGGACGCTCCCCGACGGGTACGACACCGTGCTCGACGACGAGGGCACCGGCG
TCAGCGCCGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTCGTGCTCGACGAGGCG
ACCTCCTCCGTCGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGCGGTTGGCCTCCGGCCGGACGTCGTTCGT
GATCGCGCACCGGTTGTCGACGATCCGGGACGCCGACACGATCCTCGTGATGGAGAACGGGGCGATCGTGGAGCAGGGGT
CGCACGAGGCGCTGGTCGCTGCGGACGGGGCGTATCAGCGGTTGTACGAGGCGCAGTTCGCGCAGGCGGTCGCTGAGGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-350)

ABC transporter (ABC_tran)

(413-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.413

97.192

0.403