Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHA47_RS30455 Genome accession   NZ_CP107862
Coordinates   6737248..6738987 (-) Length   579 a.a.
NCBI ID   WP_327663485.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00498     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6732248..6743987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA47_RS30445 (OHA47_30440) - 6733925..6735211 (+) 1287 WP_266719919.1 RNA polymerase sigma factor -
  OHA47_RS30450 (OHA47_30445) rcrQ 6735323..6737248 (-) 1926 WP_327663484.1 ABC transporter ATP-binding protein Regulator
  OHA47_RS30455 (OHA47_30450) rcrP 6737248..6738987 (-) 1740 WP_327663485.1 ABC transporter ATP-binding protein Regulator
  OHA47_RS30460 (OHA47_30455) - 6739159..6740589 (-) 1431 WP_327663486.1 FGGY family carbohydrate kinase -
  OHA47_RS30465 (OHA47_30460) - 6740658..6740969 (-) 312 WP_327663487.1 YtxH domain-containing protein -
  OHA47_RS30485 (OHA47_30480) - 6741679..6742716 (-) 1038 WP_327663488.1 rod shape-determining protein -
  OHA47_RS30490 (OHA47_30485) - 6743200..6743778 (-) 579 WP_327663489.1 hypothetical protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 62719.80 Da        Isoelectric Point: 5.5618

>NTDB_id=647306 OHA47_RS30455 WP_327663485.1 6737248..6738987(-) (rcrP) [Streptomyces sp. NBC_00498]
MLIKLLRTYLRPYKKPIGLLVLLQFLQTCASLYLPTLNADIIDNGVVNGDTGYILEFGALMLGVTVVQVVCNTGAVYFGA
RTAAAVGRDLRAGIFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLALMTFTLVASAPIMCVGGVVMALGLDVPLSGV
LLAVLPVMAIVLSLIIRKMRPLFRSMQVKLDTVNRVLREQITGNRVIRAFVRDDFEKDRFGAANRDLTDVSVATGRIMAL
MFPFVMTIVNVASIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMMPRAEVCAERIQEVLGTDSSVVP
PRPEASVRELRRHGHLELRGADFGYPGAEEPILRGIDITARPGETTAIIGSTGSGKSTLLGLVPRLYDTTAGTVYVDGED
VRGIDPALMAKTVGLVPQKPYLFSGTVATNLRYGNPDATDDELWHALEVAQAKGFVGKLEGGLDAPITQGGTNVSGGQRQ
RLAIARTLVQRPEIYLFDDSFSALDYATDAALRRALGEETAEATVVIVAQRVSTIRDADTIIVLDEGRVVGTGRHHELMA
DNETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=647306 OHA47_RS30455 WP_327663485.1 6737248..6738987(-) (rcrP) [Streptomyces sp. NBC_00498]
GTGCTCATAAAACTTCTGCGGACCTATCTCCGTCCGTACAAGAAACCCATCGGGCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCTCGCTGTATCTGCCCACCCTGAACGCCGACATCATTGACAACGGTGTCGTGAACGGCGACACCGGCTACA
TCCTGGAGTTCGGCGCCCTGATGCTGGGCGTCACCGTCGTCCAGGTCGTCTGCAACACCGGCGCCGTCTACTTCGGCGCC
CGGACCGCCGCGGCGGTCGGCCGGGACCTGCGGGCGGGGATCTTCGACCGCGTGCAGTCCTTCTCGGCCCGCGAGGTCGG
CCAGTTCGGCGCCCCTTCGCTGATCACCCGCACCACGAACGATGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGGTGGCCTCGGCGCCGATCATGTGTGTCGGCGGCGTCGTCATGGCGCTCGGCCTGGACGTGCCGCTGTCGGGCGTG
CTGCTCGCCGTGCTGCCCGTCATGGCGATCGTCCTGTCGCTGATCATCCGCAAGATGCGGCCGTTGTTCCGGTCCATGCA
GGTCAAGCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGCGACG
ACTTCGAGAAGGACCGGTTCGGAGCCGCGAACCGGGACCTGACCGATGTGTCGGTCGCCACCGGCCGGATCATGGCACTG
ATGTTCCCGTTCGTGATGACGATCGTGAACGTCGCGTCCATCGCCGTGGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGCATGCAGATCGGTGACCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGAGCGTGATGATGGCCACGTTCA
TGTTCATGATGATGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAAGTGCTCGGCACCGATTCGAGTGTGGTGCCG
CCACGGCCCGAGGCGTCGGTGCGTGAACTGCGCCGCCACGGCCATCTGGAGCTGCGGGGCGCCGACTTCGGCTACCCGGG
CGCCGAGGAACCCATCCTGCGCGGCATCGACATCACGGCCCGCCCCGGCGAGACCACGGCCATCATCGGGTCGACCGGCA
GCGGCAAGTCGACACTCCTCGGCCTCGTGCCGCGGCTGTACGACACCACGGCCGGCACGGTCTACGTGGACGGCGAGGAC
GTCCGCGGGATCGACCCGGCACTGATGGCGAAGACGGTCGGGCTCGTGCCGCAGAAGCCGTACCTGTTCTCCGGAACCGT
CGCCACGAACCTGCGCTACGGCAACCCGGACGCCACCGACGACGAGCTGTGGCACGCGCTGGAAGTGGCGCAGGCCAAGG
GGTTCGTCGGCAAGCTGGAGGGCGGGCTCGACGCGCCCATCACGCAGGGCGGCACCAATGTCTCCGGCGGACAGCGCCAG
CGCCTCGCCATCGCACGCACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGC
GACCGACGCGGCGCTGCGCCGGGCGCTCGGCGAGGAGACCGCCGAGGCGACCGTGGTGATCGTGGCCCAGCGGGTCTCGA
CGATCCGCGACGCCGACACGATCATCGTGCTCGACGAGGGCCGCGTCGTCGGCACCGGACGCCATCACGAGCTGATGGCC
GACAACGAGACGTACCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(353-500)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.497

97.237

0.394