Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHP34_RS30465 Genome accession   NZ_CP107861
Coordinates   6737271..6739196 (-) Length   641 a.a.
NCBI ID   WP_327663484.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00499     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6732271..6744196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHP34_RS30450 (OHP34_30455) - 6732491..6733756 (+) 1266 WP_327663482.1 FAD-dependent oxidoreductase -
  OHP34_RS30455 (OHP34_30460) dnaG 6733812..6735719 (+) 1908 WP_327663483.1 DNA primase -
  OHP34_RS30460 (OHP34_30465) - 6735873..6737159 (+) 1287 WP_266719919.1 RNA polymerase sigma factor -
  OHP34_RS30465 (OHP34_30470) rcrQ 6737271..6739196 (-) 1926 WP_327663484.1 ABC transporter ATP-binding protein Regulator
  OHP34_RS30470 (OHP34_30475) rcrP 6739196..6740935 (-) 1740 WP_327663485.1 ABC transporter ATP-binding protein Regulator
  OHP34_RS30475 (OHP34_30480) - 6741107..6742537 (-) 1431 WP_327663486.1 FGGY family carbohydrate kinase -
  OHP34_RS30480 (OHP34_30485) - 6742606..6742917 (-) 312 WP_327663487.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 68600.72 Da        Isoelectric Point: 4.9581

>NTDB_id=647200 OHP34_RS30465 WP_327663484.1 6737271..6739196(-) (rcrQ) [Streptomyces sp. NBC_00499]
MSGPMGRMAAGAPGSRSMDFKGSGKRLLKRLAAHRTAVVGVLVSVVISVGLSVVGPKILGHATDLLFGGIIGGQMPAGQT
KEQVLDGLRAKGDGGMADMLGGVDFTPGQGVDFGAIGEVLLLGLAVFAVAGLTMMIGTRLANRTINLAVGQLRAELQGKL
SRLPLSYYDQQKRGEVLSRATNDMDNLGQTLQQTMGQMLNSLLTVIGVLAMMFWISWLLALVALVTVPLSVFVAAKVGKR
SQPQFVQQWRATGALNAHIEEMYTGHNLVKVFGRQDESAELFAEQNDALYEASFKAQFNSGIMQPLMFFISNLNYVLVAV
VGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVATAERVFELLDAEEQSAEPVPGEKPDNLRGHVEFEH
VAFRYEKDTPLIEDLSLTADPGHTVAIVGPTGAGKTTLVNLLLRFYEVTGGRITLDGVDIAKMSREELRAGIGMVLQDTW
LFGGTIAENIAYGAPKDVTREEVEEAAKAAHADRFIRTLPDGYDTVLDDEGTGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLASGRTSFVIAHRLSTIRDADTILVMENGAIVEQGSHEALVAADGAYQRLYEAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=647200 OHP34_RS30465 WP_327663484.1 6737271..6739196(-) (rcrQ) [Streptomyces sp. NBC_00499]
ATGAGTGGGCCCATGGGGCGGATGGCGGCCGGTGCGCCCGGTTCGCGTTCGATGGACTTCAAGGGGTCGGGCAAGCGGCT
CCTGAAGCGGCTCGCCGCGCACCGCACGGCGGTGGTCGGGGTGCTCGTCTCCGTCGTGATCAGCGTCGGCCTGTCGGTGG
TCGGGCCGAAGATCCTCGGCCACGCCACCGACCTGCTGTTCGGCGGGATCATCGGCGGGCAGATGCCGGCCGGGCAGACC
AAGGAGCAGGTCCTCGACGGCCTGCGCGCCAAGGGCGACGGCGGCATGGCCGACATGCTCGGCGGCGTCGACTTCACGCC
GGGACAGGGCGTCGACTTCGGCGCGATCGGGGAGGTGCTGCTGCTCGGCCTCGCCGTGTTCGCGGTCGCGGGCCTGACGA
TGATGATCGGCACCCGGCTCGCCAACCGGACGATCAACCTGGCCGTGGGGCAGCTCCGCGCCGAGCTGCAGGGCAAGCTG
TCGCGGCTGCCGCTGTCGTACTACGACCAGCAGAAGCGCGGCGAGGTGCTGAGCCGGGCGACCAACGACATGGACAACCT
CGGGCAGACGCTCCAGCAGACGATGGGGCAGATGCTCAACTCGCTGCTGACCGTCATCGGCGTGCTCGCGATGATGTTCT
GGATCTCCTGGCTGCTCGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGGTGTTCGTCGCGGCGAAGGTCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGCGGGCGACCGGCGCGCTCAACGCGCACATCGAGGAGATGTACACCGGCCACAA
CCTGGTGAAGGTGTTCGGGCGGCAGGACGAGTCGGCGGAGCTGTTCGCCGAACAGAACGACGCGCTGTACGAGGCGTCGT
TCAAGGCGCAGTTCAACAGCGGCATCATGCAGCCGCTGATGTTCTTCATCTCGAACCTGAACTATGTGCTGGTCGCTGTC
GTCGGCGGGTTGAGGGTGGCCAGTGGGTCGCTCTCCATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGCCAGTTCTC
GATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCGACGGCCGAGCGGGTCTTCGAACTGC
TCGACGCGGAGGAGCAGTCGGCGGAGCCGGTGCCCGGCGAGAAGCCGGACAACCTGCGCGGGCACGTCGAGTTCGAGCAC
GTGGCCTTCCGCTACGAGAAGGACACGCCGCTCATCGAGGACCTGTCGCTCACCGCCGACCCCGGTCACACGGTGGCGAT
CGTCGGGCCGACGGGCGCGGGCAAGACGACCCTCGTCAATCTGCTGCTGCGGTTCTACGAGGTCACGGGCGGGCGCATCA
CGCTCGACGGCGTCGACATCGCGAAGATGTCGCGGGAGGAGCTGCGCGCCGGGATCGGCATGGTGCTCCAGGACACCTGG
CTGTTCGGCGGGACCATCGCGGAGAACATCGCGTACGGGGCCCCGAAGGACGTCACCCGCGAGGAGGTCGAGGAGGCGGC
GAAGGCCGCGCACGCCGACCGGTTCATCCGGACGCTGCCCGACGGGTACGACACCGTGCTCGACGACGAGGGCACCGGCG
TCAGCGCCGGTGAGAAGCAACTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTCGTGCTCGACGAGGCG
ACCTCCTCCGTCGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGCGGTTGGCCTCCGGCCGGACGTCGTTCGT
GATCGCGCACCGGTTGTCGACGATCCGTGATGCGGACACGATCCTCGTGATGGAGAACGGGGCGATCGTGGAGCAGGGCT
CGCACGAGGCGCTGGTCGCTGCGGACGGGGCGTATCAGCGGTTGTACGAGGCGCAGTTCGCGCAGGCGGTCGCTGAGGTG
GACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-350)

ABC transporter (ABC_tran)

(413-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.252

97.192

0.401