Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHQ36_RS15890 Genome accession   NZ_CP107860
Coordinates   3492942..3494675 (+) Length   577 a.a.
NCBI ID   WP_330304401.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00500     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3487942..3499675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHQ36_RS15855 (OHQ36_15845) - 3487968..3489185 (+) 1218 WP_330304397.1 MFS transporter -
  OHQ36_RS15860 (OHQ36_15850) - 3489251..3490090 (+) 840 WP_330304398.1 peptidoglycan recognition family protein -
  OHQ36_RS15880 (OHQ36_15870) - 3490791..3491096 (+) 306 WP_330304399.1 YtxH domain-containing protein -
  OHQ36_RS15885 (OHQ36_15875) - 3491289..3492743 (+) 1455 WP_330304400.1 FGGY family carbohydrate kinase -
  OHQ36_RS15890 (OHQ36_15880) rcrP 3492942..3494675 (+) 1734 WP_330304401.1 ABC transporter ATP-binding protein Regulator
  OHQ36_RS15895 (OHQ36_15885) rcrQ 3494675..3496603 (+) 1929 WP_330304402.1 ABC transporter ATP-binding protein Regulator
  OHQ36_RS15900 (OHQ36_15890) - 3496833..3498185 (-) 1353 WP_330304403.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62531.73 Da        Isoelectric Point: 5.9248

>NTDB_id=647059 OHQ36_RS15890 WP_330304401.1 3492942..3494675(+) (rcrP) [Streptomyces sp. NBC_00500]
MLIRLLRTYLSPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGAVMIGISLAQVVCNIGAVYFGA
RTAAAVGRDIRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIILALGLDVPLSAV
LVAVVPVLGIGVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKERFRGANTELTEVSLGTGRMLAL
MFPMVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLGTSSSVVP
PTAPVVELRRHGHLEIREAGFRYPGAEEPVLRTIDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGQVLVDGVDVA
TIEPKLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVDQLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALADETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGAGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=647059 OHQ36_RS15890 WP_330304401.1 3492942..3494675(+) (rcrP) [Streptomyces sp. NBC_00500]
GTGCTCATACGACTGCTTCGGACCTACCTCAGTCCGTACAAGAAGCCCATCGCCTTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACACTCAACGCGCACATCATCGACAACGGTGTCGTGAAGGGGGACACGGGATACA
TCCTGTCCTTCGGCGCCGTGATGATCGGCATCTCGCTGGCGCAGGTCGTCTGCAACATCGGGGCCGTGTACTTCGGCGCC
CGTACGGCGGCGGCCGTCGGCCGGGACATCCGGGCCGCCGTCTTCGACCGCGTCCAGTCCTTCTCGGCTCGCGAGGTCGG
CCACTTCGGGGCGCCCTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCGCCCTGATGACGTTCA
CGCTGCTGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCATCCTGGCCCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTGGTCGCCGTGGTGCCGGTCCTCGGCATCGGCGTGACCCTCATCGTGCGCAGGCTGCGCCCGCTGTTCCGGACCATGCA
GGTCCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAATCGCGTGATCCGTGCCTTCGTGCGCGACG
ACTACGAGAAGGAGCGCTTCCGGGGCGCGAACACCGAGCTCACCGAGGTGTCGCTGGGCACCGGGCGGATGCTGGCGCTG
ATGTTCCCGATGGTCATGACGGTGGTGAACCTGTCGTCCATCGCGGTCGTCTGGTTCGGCGCCCACCGCATCGACAGCGG
CGGCATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCGAGGAGGTCCTCGGCACGAGCAGCAGCGTGGTCCCG
CCGACCGCGCCCGTCGTCGAGCTGCGCCGCCACGGCCACCTGGAGATCCGCGAGGCAGGGTTCCGCTACCCGGGCGCCGA
GGAGCCGGTCCTGAGGACCATCGACCTGGTGGCCCGGCCCGGCGAGGTGACCGCCGTGATCGGTTCCACCGGCAGCGGCA
AGTCCACCCTGCTCGGCCTGGTCCCCCGCCTCTTCGACGCCACCGACGGCCAGGTGCTCGTCGACGGCGTGGACGTCGCG
ACCATCGAGCCGAAGCTGCTGGCCAGGACGGTCGGCCTGGTCCCGCAGAAGCCGTACCTGTTCGCGGGCACCGTGGCCAC
GAACCTCCGGTACGGCAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGACCAGCTGGAGAACGGCCTGGACTCCCCGATCGCGCAGGGCGGCACGAATGTGTCGGGCGGGCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGCCCCGAGATCTATCTCTTCGACGACTCCTTCTCGGCGCTCGACTACGCGACCGA
CGCGGCACTGCGGGCGGCGCTCGCCGACGAGACCGCCGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GGGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCGCCGGACGGCACCACGAACTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.48

100

0.409