Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   L0M13_RS07880 Genome accession   NZ_CP090977
Coordinates   1492315..1494795 (+) Length   826 a.a.
NCBI ID   WP_235199017.1    Uniprot ID   -
Organism   Planococcus sp. 107-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1487315..1499795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0M13_RS07855 (L0M13_07855) - 1487495..1488784 (-) 1290 WP_235199013.1 replication-associated recombination protein A -
  L0M13_RS07860 (L0M13_07860) cymR 1488918..1489334 (+) 417 WP_235199014.1 cysteine metabolism transcriptional regulator CymR -
  L0M13_RS07865 (L0M13_07865) - 1489348..1490482 (+) 1135 Protein_1513 cysteine desulfurase family protein -
  L0M13_RS07870 (L0M13_07870) mnmA 1490497..1491615 (+) 1119 WP_235199015.1 tRNA 2-thiouridine(34) synthase MnmA -
  L0M13_RS07875 (L0M13_07875) - 1491630..1492289 (+) 660 WP_235199016.1 tetratricopeptide repeat protein -
  L0M13_RS07880 (L0M13_07880) recD2 1492315..1494795 (+) 2481 WP_235199017.1 ATP-dependent RecD-like DNA helicase Machinery gene
  L0M13_RS07885 (L0M13_07885) alaS 1495287..1497909 (+) 2623 Protein_1517 alanine--tRNA ligase -
  L0M13_RS07890 (L0M13_07890) - 1497999..1498265 (+) 267 WP_052651832.1 IreB family regulatory phosphoprotein -
  L0M13_RS07895 (L0M13_07895) ruvX 1498267..1498683 (+) 417 WP_235199018.1 Holliday junction resolvase RuvX -
  L0M13_RS07900 (L0M13_07900) - 1498697..1499005 (+) 309 WP_235199019.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 826 a.a.        Molecular weight: 91674.21 Da        Isoelectric Point: 5.1913

>NTDB_id=646869 L0M13_RS07880 WP_235199017.1 1492315..1494795(+) (recD2) [Planococcus sp. 107-1]
MTGQIDLFQEEVQFVLGRPVVSIFHNPQNLFSIAKVKIQETNTSYTEKEIIVSGYFPKLSLEEQYRFTGSVKNHPKYGVQ
FQVETFTKEVPETEQGIVHYLSSDMFNGIGRKTAETIVKKLGKDAIKKILEDPEALDAVPRLSDDKKDTIRSTLQMNLGL
ERVMIQLNDWGFGPQVGMRIYQAYREETIDVLTKNPFRLIEEIEGIGFQRADELGAKLGITGAHPDRIKASVLHLLNQAS
LSEGHVYMDAITLIPLVKGMLESSQRDEISIEAISKAMIELNEESKVAGEETRLYLPSLYYSEVGIATKLETLLGSQANR
DRFPASEVRRALGEAEERLGVNYAETQIEAIDGSINSSVMILTGGPGTGKTTVVRGLVEVYAELHGLSLDPKDYAKKKEP
FPIILAAPTGRAAKRLSESTELPAMTIHRLLGFNGQEKEEETEKEIEGRLIIIDEMSMVDTWLAHQLLKAVPDDAQIIFV
GDQDQLPPVGPGQVLRDLLESKRIPTVELKDIYRQTSGSSIIELAHQMKKGQLPADITAKTSDRSFIKAGADQIAFVVEK
VVKSALSKGHSIKDIQVLAPMYRGPAGIDALNRMIQEMVNPNPDGSRKELVFGDITYRIGDKILQLVNQPESNVFNGDMG
EVIAILKAKETVEKQDILVASFDGIEVTYQRSDLNQLTLAYCCSIHKAQGSEFPTVIMPVVRGYMKMLRRNLLYTGITRS
KDFLILCGDPQVFRYGVERTDDVQRMTTLKKRLQLSAEEPVQETAVAEKAAMVESVPVAKTEPAIAEAKTAAANTKGPVS
LTNENVHFIHPLVGMEGITPKDFMEV

Nucleotide


Download         Length: 2481 bp        

>NTDB_id=646869 L0M13_RS07880 WP_235199017.1 1492315..1494795(+) (recD2) [Planococcus sp. 107-1]
ATGACCGGACAAATCGATTTATTCCAGGAAGAAGTGCAATTTGTACTGGGCAGGCCCGTCGTCTCGATTTTTCACAATCC
CCAGAATCTGTTTTCCATCGCGAAAGTGAAAATCCAAGAGACGAACACCTCCTATACCGAAAAAGAAATTATTGTCTCGG
GCTATTTCCCGAAATTGTCACTGGAAGAGCAGTACCGATTTACAGGCTCGGTAAAAAACCATCCGAAATACGGCGTGCAA
TTCCAAGTGGAGACCTTCACAAAAGAAGTGCCTGAAACAGAACAAGGCATCGTCCACTATTTATCGAGCGATATGTTCAA
TGGCATCGGCCGTAAAACGGCGGAAACGATTGTCAAAAAGCTCGGGAAAGATGCCATTAAAAAGATTTTGGAAGATCCGG
AAGCGCTTGATGCCGTACCGCGCCTTTCAGATGACAAGAAAGACACCATCCGCTCCACGCTGCAGATGAATCTCGGACTA
GAGCGCGTGATGATCCAATTAAACGATTGGGGTTTCGGTCCGCAAGTCGGCATGCGGATTTATCAGGCGTACCGTGAAGA
AACGATTGACGTACTTACGAAAAACCCGTTCCGATTGATTGAAGAAATTGAAGGCATCGGTTTTCAGCGGGCAGATGAAT
TGGGAGCAAAACTCGGCATCACTGGCGCACATCCCGACCGCATCAAAGCGTCTGTTCTGCATTTATTGAACCAGGCGTCG
CTGTCTGAAGGCCACGTTTATATGGATGCAATAACCTTGATCCCGCTCGTGAAAGGGATGCTTGAATCGAGCCAGCGCGA
CGAGATATCCATCGAAGCAATTTCGAAAGCGATGATTGAGCTGAATGAAGAAAGCAAAGTGGCGGGCGAAGAAACCCGCC
TCTATTTGCCGTCCTTGTATTACTCGGAAGTCGGCATTGCGACAAAACTCGAAACTTTGCTTGGCTCGCAGGCAAACCGG
GACCGTTTTCCGGCGTCAGAAGTGCGGCGGGCACTCGGTGAAGCGGAGGAGCGGCTCGGGGTGAATTATGCTGAAACACA
GATTGAAGCAATAGACGGCAGCATCAATTCTTCTGTCATGATATTGACAGGGGGACCGGGCACTGGGAAAACGACGGTTG
TCCGCGGCCTTGTCGAAGTGTATGCGGAACTGCACGGCTTATCGCTCGACCCGAAAGACTACGCGAAGAAAAAAGAGCCG
TTTCCCATCATTCTCGCTGCTCCGACCGGGCGCGCTGCAAAGCGTCTGAGTGAATCGACGGAACTTCCGGCCATGACGAT
CCACCGCTTGCTCGGCTTTAACGGCCAGGAAAAAGAAGAAGAAACGGAAAAGGAAATCGAAGGGCGTTTGATCATCATCG
ATGAAATGTCGATGGTCGATACGTGGCTAGCGCATCAATTGCTGAAAGCTGTCCCGGACGATGCCCAGATCATTTTTGTC
GGAGACCAGGACCAACTGCCGCCAGTCGGACCTGGCCAAGTGCTGCGCGATCTGCTCGAATCAAAACGCATTCCGACGGT
CGAGTTGAAGGACATCTACCGCCAGACTTCCGGATCGTCGATCATTGAACTGGCCCACCAAATGAAAAAAGGCCAATTGC
CGGCGGATATTACCGCAAAAACATCAGACCGATCGTTTATCAAAGCGGGGGCGGACCAAATAGCCTTTGTCGTCGAGAAA
GTGGTCAAGAGCGCCTTGTCAAAAGGGCATTCGATCAAAGACATCCAGGTGCTTGCGCCGATGTACCGGGGTCCGGCTGG
AATCGATGCCTTGAACCGCATGATCCAGGAAATGGTCAACCCGAATCCGGATGGTTCACGAAAAGAACTGGTCTTCGGCG
ACATCACGTACCGGATCGGCGACAAAATCCTGCAGCTTGTAAACCAACCGGAAAGCAATGTGTTCAACGGGGATATGGGT
GAAGTGATCGCGATTTTAAAAGCGAAAGAAACGGTGGAGAAGCAAGACATACTCGTCGCGTCGTTTGACGGCATTGAAGT
GACCTACCAGCGCAGCGACTTGAACCAGTTGACGCTCGCGTATTGCTGTTCGATCCATAAAGCACAAGGATCGGAATTCC
CGACAGTCATTATGCCGGTCGTCCGCGGCTATATGAAAATGCTGCGGCGCAACCTTCTTTATACGGGCATCACCCGCAGC
AAAGACTTTTTGATTCTTTGCGGCGATCCGCAAGTGTTCCGCTACGGAGTCGAACGGACGGATGATGTGCAGCGCATGAC
GACGCTGAAAAAACGGCTGCAATTGTCTGCGGAAGAACCGGTGCAGGAAACAGCTGTTGCTGAAAAGGCGGCGATGGTTG
AATCAGTGCCTGTCGCTAAAACAGAACCTGCGATTGCCGAAGCTAAAACGGCTGCGGCAAATACAAAAGGGCCGGTTAGC
CTTACCAATGAAAACGTCCATTTCATCCATCCGCTTGTCGGCATGGAAGGCATCACGCCGAAAGATTTTATGGAAGTGTA
A

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

AAA domain (AAA_30)

(343-551)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-652)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

54.09

99.153

0.536