Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   L0M13_RS07805 Genome accession   NZ_CP090977
Coordinates   1473739..1476084 (+) Length   781 a.a.
NCBI ID   WP_235199007.1    Uniprot ID   -
Organism   Planococcus sp. 107-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1468739..1481084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0M13_RS07780 (L0M13_07780) tgt 1468965..1470107 (+) 1143 WP_235199003.1 tRNA guanosine(34) transglycosylase Tgt -
  L0M13_RS07785 (L0M13_07785) yajC 1470142..1470417 (+) 276 WP_235199004.1 preprotein translocase subunit YajC -
  L0M13_RS07790 (L0M13_07790) - 1470557..1470877 (+) 321 WP_235199005.1 post-transcriptional regulator -
  L0M13_RS07795 (L0M13_07795) secDF 1470943..1473220 (+) 2278 Protein_1499 protein translocase subunit SecDF -
  L0M13_RS07800 (L0M13_07800) - 1473310..1473654 (+) 345 WP_235199006.1 lipopolysaccharide assembly LapA domain-containing protein -
  L0M13_RS07805 (L0M13_07805) recJ 1473739..1476084 (+) 2346 WP_235199007.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  L0M13_RS07810 (L0M13_07810) - 1476075..1476587 (+) 513 WP_235199008.1 adenine phosphoribosyltransferase -
  L0M13_RS18500 - 1476661..1477329 (+) 669 WP_311195640.1 glycosyl hydrolase family 28-related protein -
  L0M13_RS18505 - 1477356..1478201 (+) 846 WP_311195641.1 hypothetical protein -
  L0M13_RS07820 (L0M13_07820) - 1478304..1480495 (+) 2192 Protein_1505 RelA/SpoT family protein -
  L0M13_RS07825 (L0M13_07825) dtd 1480505..1480945 (+) 441 WP_235199009.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 781 a.a.        Molecular weight: 87702.40 Da        Isoelectric Point: 4.8530

>NTDB_id=646868 L0M13_RS07805 WP_235199007.1 1473739..1476084(+) (recJ) [Planococcus sp. 107-1]
MIESKKRWRLTTPDQNLVEEIQKELSISSVLAKILVTRGITSADTAKKFMALDPSGIHNPYLMKDMDIAVERIRQAIESQ
EKIMVYGDYDADGVTSTTVMMTVLEDLGADAIFKIPNRFKHGYGPNKELFQQAFDEGVKLIVTVDNGISGIDEVAFANDL
GMEVIISDHHDIGDTMPDALAIVHPRHPEGHYPFGELAGVGVAFKMAQALYEDVPDHLLELVAIGTIADLVPLHDENRLF
VKEGLSALQNSPRPAIEALAEVSGVKQREITEETIGFMFGPRINAIGRLQDADPAVKLFMTEDPGEARNLAGGLDVLNKE
RQAIVKKITDEAIAQVDQRYPDEPPYVIVVAQEGWNPGVVGIVASKLTEKYYRPSIVLSLNPETGKAKGSARSIDGFHLY
NELAVNRDILPHFGGHPMAAGMTLQMAHVDELRERLNQQAKDSLTEEDLIPVVEIDIPVRLDEIDIDTIESMRYLAPFGM
GFAKPKFFLEGVTVSSIRKIGAAQNHLKMELAQNSGTLDAVGFGIGPIGDELTPDVKIDVIGDLQINEWNGRKKPQLMVE
DVRTDQWQLFDIRGIRQVSRWSKLIPEKGQVFLAFKPDTAAVFRTLIDEPIYSPEALSGLDEPKHHLVLLDMPDTEEQLA
TILSILKPQRIYAHFYAKESQYFEQIPTREQFKWLFAFLKKRGTFDFKKHGDELAKHKGWSRESIFFMLQVFFELGFVTL
NNGLTELAESPGKRDLSEAPIYKKREQQIALEQKLLYASYKDLKEWFDAKVSAKEEEQIWI

Nucleotide


Download         Length: 2346 bp        

>NTDB_id=646868 L0M13_RS07805 WP_235199007.1 1473739..1476084(+) (recJ) [Planococcus sp. 107-1]
ATGATTGAGTCGAAAAAAAGATGGCGCTTAACGACGCCTGATCAAAATTTAGTAGAAGAAATTCAAAAGGAATTATCAAT
TTCGTCCGTCTTGGCAAAAATTCTGGTGACGCGCGGCATTACAAGCGCAGACACAGCTAAAAAGTTTATGGCCTTGGACC
CAAGCGGCATACATAATCCTTATTTGATGAAAGATATGGATATAGCTGTCGAGCGGATACGCCAGGCCATTGAATCCCAG
GAAAAAATTATGGTTTACGGCGATTACGACGCCGATGGAGTAACAAGCACTACAGTCATGATGACGGTTTTAGAAGATTT
AGGAGCAGATGCCATATTCAAGATTCCGAACCGGTTCAAGCATGGCTATGGCCCGAATAAGGAATTGTTCCAGCAAGCAT
TTGACGAAGGCGTTAAATTGATCGTTACAGTCGATAATGGCATATCGGGCATTGACGAAGTGGCATTTGCCAATGATTTA
GGCATGGAAGTCATTATCAGTGACCACCATGACATCGGCGACACGATGCCGGACGCACTCGCTATCGTCCATCCGCGGCA
TCCGGAGGGGCATTATCCTTTTGGTGAACTGGCAGGAGTCGGTGTGGCTTTTAAGATGGCCCAAGCCTTGTACGAAGATG
TGCCGGATCATTTGCTTGAACTCGTTGCGATCGGTACCATTGCGGATCTTGTGCCGCTGCATGATGAGAACCGTTTGTTC
GTCAAAGAAGGACTTTCGGCGCTTCAAAATTCACCGCGTCCTGCTATCGAAGCTTTGGCAGAAGTGTCAGGCGTCAAGCA
GCGTGAAATCACAGAAGAAACGATAGGCTTTATGTTCGGTCCTCGTATTAACGCAATTGGACGGCTGCAAGATGCAGATC
CTGCCGTGAAATTGTTCATGACAGAAGATCCAGGAGAAGCGCGGAACTTGGCAGGCGGCCTTGATGTCTTGAATAAAGAA
CGCCAGGCGATCGTAAAGAAAATAACAGATGAAGCCATAGCTCAAGTGGACCAGCGTTATCCGGACGAGCCGCCCTATGT
CATTGTGGTGGCACAGGAAGGATGGAATCCGGGAGTGGTCGGGATCGTTGCATCCAAACTGACGGAAAAATATTACCGTC
CGTCCATTGTCTTGTCGCTGAATCCGGAAACCGGAAAAGCGAAAGGTTCTGCACGAAGCATCGACGGCTTCCATCTCTAT
AACGAGCTTGCGGTTAACCGGGATATTTTGCCGCATTTCGGGGGACACCCGATGGCAGCCGGCATGACGCTCCAAATGGC
GCATGTCGATGAACTGCGGGAACGATTGAATCAGCAAGCAAAAGACAGCTTGACGGAGGAAGATTTGATTCCGGTCGTGG
AAATTGACATTCCGGTCAGACTGGATGAAATCGATATTGACACGATCGAATCAATGCGCTACCTTGCTCCATTTGGGATG
GGCTTTGCGAAGCCGAAGTTTTTCTTGGAAGGTGTGACGGTTTCGTCTATCCGGAAGATCGGTGCCGCACAGAATCATTT
GAAGATGGAGCTTGCACAAAATTCAGGAACACTGGATGCGGTAGGTTTTGGCATCGGGCCGATTGGCGATGAATTGACGC
CGGATGTGAAAATTGATGTAATTGGCGACTTGCAGATCAATGAATGGAACGGCCGCAAGAAACCGCAATTAATGGTAGAA
GATGTGCGGACCGACCAGTGGCAATTATTCGATATCCGCGGCATCCGCCAAGTATCACGCTGGTCGAAGCTGATTCCTGA
AAAAGGGCAGGTTTTCCTTGCCTTTAAGCCGGATACAGCAGCCGTTTTCCGAACGCTGATCGATGAGCCCATCTATAGCC
CGGAAGCTTTGAGTGGATTGGATGAGCCGAAACACCATTTGGTGCTGCTCGATATGCCGGACACGGAAGAGCAATTAGCC
ACAATATTGTCGATTTTAAAACCGCAGCGGATCTATGCTCATTTCTATGCAAAGGAATCGCAGTATTTCGAGCAGATCCC
TACGCGTGAGCAATTTAAATGGCTGTTTGCGTTTCTTAAAAAGCGGGGGACGTTCGATTTCAAAAAGCATGGCGATGAAC
TGGCAAAGCATAAAGGCTGGAGCCGGGAGTCAATATTTTTCATGCTGCAGGTGTTTTTTGAACTCGGTTTTGTTACACTT
AACAATGGACTTACAGAGCTTGCTGAATCTCCAGGGAAACGTGATTTGTCGGAAGCGCCGATCTACAAGAAGCGGGAACA
GCAGATTGCATTGGAACAAAAGCTTTTGTATGCATCTTATAAAGACTTAAAAGAGTGGTTTGATGCGAAAGTATCAGCCA
AGGAGGAAGAACAGATATGGATTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(317-439)

RecJ OB domain (RecJ_OB)

(455-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-767)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

49.093

98.848

0.485