Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG266_RS28520 Genome accession   NZ_CP107799
Coordinates   6465679..6467907 (+) Length   742 a.a.
NCBI ID   WP_371549022.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00554 strain NBC 00554     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6460679..6472907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG266_RS28505 (OG266_28490) - 6460971..6462917 (-) 1947 WP_371549019.1 substrate-binding domain-containing protein -
  OG266_RS28510 (OG266_28495) - 6462907..6464430 (-) 1524 WP_329547496.1 sugar ABC transporter ATP-binding protein -
  OG266_RS28515 (OG266_28500) - 6464493..6465509 (-) 1017 WP_266461883.1 LacI family DNA-binding transcriptional regulator -
  OG266_RS28520 (OG266_28505) recD/recD2/recDB 6465679..6467907 (+) 2229 WP_371549022.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG266_RS28525 (OG266_28510) - 6468170..6469459 (+) 1290 WP_266461889.1 citrate synthase -
  OG266_RS28530 (OG266_28515) - 6470002..6472266 (-) 2265 WP_371549025.1 heavy metal translocating P-type ATPase -
  OG266_RS28535 (OG266_28520) - 6472368..6472607 (-) 240 WP_266461894.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 80363.98 Da        Isoelectric Point: 6.7889

>NTDB_id=646456 OG266_RS28520 WP_371549022.1 6465679..6467907(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00554 strain NBC 00554]
MSQLAVLEGVLERITYANEENGYTVARVDTGRGGGDLLTVVGSLLGAQVGESLRMEGRWGSHPQFGKQFTVENYTTLLPA
TVQGIRRYLGSGLVKGIGPVFADRITQHFGLDTLQIIEEDPKRLIEVPGLGPKRTKKIADAWEEQKAIKEVMLFLQTVEV
STSIAVRIYKKYGDASISVVKNQPYRLASDVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQSTDQGHCYLPEERL
IADAVKLLQVDTGLVIECLAELAAPAEDGEDPGVVREKVPGPDGGDPVTAIYLVPFHRAELSLSAQLLRLLRTDQDRMPG
FHDVAWDKALAWLKGRTGTELAPEQEEAVRLALTKKVAVLTGGPGCGKSFTVRSIVELARAKRAKVVLAAPTGRAAKRLA
ELTGAEASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQLPSVGAGEVLR
DLLADGGPVPAVRLTQVFRQAQKSGVVTNAHRINSGQHPHTENMKDFFLFVEDDTEEAGRLTVDVAARRIPAKFGLDPRR
DVQVLAPMHRGPAGAGALNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGKNGVFNGTVGVVTSLDAEEQR
LTVLTDEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQA
VRTVSAGRRCTALDFRLSGAHL

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=646456 OG266_RS28520 WP_371549022.1 6465679..6467907(+) (recD/recD2/recDB) [Streptomyces sp. NBC_00554 strain NBC 00554]
ATGTCTCAGCTGGCTGTCCTGGAGGGCGTACTCGAGCGGATCACGTACGCCAACGAGGAGAACGGGTACACGGTCGCGCG
GGTCGACACCGGCCGCGGCGGCGGCGACCTGCTCACCGTCGTCGGCTCGCTGCTCGGTGCGCAGGTGGGGGAGTCCCTGC
GCATGGAGGGCCGCTGGGGCTCCCATCCGCAGTTCGGCAAGCAGTTCACGGTGGAGAACTACACGACGCTGCTGCCGGCC
ACCGTCCAGGGCATCCGCCGCTATCTCGGCTCGGGCCTGGTCAAGGGCATCGGCCCGGTCTTCGCCGACCGGATCACCCA
GCATTTCGGCCTGGACACCCTGCAGATCATCGAGGAGGACCCGAAGCGGCTCATCGAGGTGCCGGGGCTCGGCCCCAAGC
GCACCAAGAAGATCGCCGACGCCTGGGAGGAGCAGAAGGCGATCAAGGAGGTCATGCTCTTCCTCCAGACCGTCGAGGTG
TCCACGTCGATCGCGGTCCGCATCTACAAGAAGTACGGCGACGCGTCGATCTCGGTGGTCAAGAACCAGCCCTACCGGCT
CGCGTCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAGTCCGTCGGCATCCCGCACGACAGCCCGG
AGCGCGTCAAGGCCGGTCTCCAGTACGCACTTTCGCAGTCCACCGACCAGGGCCACTGCTATCTCCCCGAGGAGCGCCTG
ATCGCGGACGCCGTGAAGCTCCTCCAGGTGGACACGGGCCTTGTCATCGAGTGCCTCGCGGAGCTGGCGGCACCGGCCGA
GGACGGCGAGGACCCCGGTGTCGTACGGGAGAAGGTGCCGGGCCCGGACGGCGGCGACCCGGTGACGGCCATCTACCTGG
TCCCCTTCCACCGCGCCGAACTCTCCCTGTCCGCCCAGCTGTTGCGCCTCCTGCGCACCGACCAGGACCGGATGCCCGGC
TTCCATGACGTGGCCTGGGACAAGGCACTTGCCTGGCTGAAGGGGCGTACGGGCACGGAGTTGGCGCCCGAGCAGGAGGA
GGCGGTCCGGCTCGCGCTCACCAAGAAGGTCGCCGTGCTCACCGGCGGCCCCGGCTGCGGCAAGTCCTTCACGGTCCGCT
CGATCGTGGAACTGGCGCGCGCCAAGCGGGCGAAGGTCGTCCTGGCGGCGCCGACGGGACGCGCAGCCAAGCGGCTCGCC
GAGCTGACCGGGGCCGAGGCCTCCACCGTGCACCGGCTCCTGGAGCTGAAGCCGGGCGGCGACGCGGCGTACGACAAGGA
CCGGCCGCTGGACGCCGACCTGGTGGTCGTGGACGAGGCCTCGATGCTCGACCTGCTCCTTGCCAACAAGCTGGTGAAGG
CGGTGCCCCCGGGCGCGCATCTGCTCTTCGTGGGAGATGTCGACCAGCTCCCCAGCGTCGGCGCCGGCGAGGTGCTGCGC
GATCTGCTCGCCGACGGCGGCCCGGTCCCGGCGGTCCGCCTCACCCAGGTCTTCCGGCAGGCCCAGAAGTCCGGGGTGGT
GACGAACGCGCACCGGATCAACTCGGGGCAGCACCCGCACACGGAGAACATGAAGGACTTCTTCCTCTTCGTCGAGGACG
ACACCGAGGAGGCGGGACGGCTCACGGTGGACGTGGCGGCACGGCGGATTCCGGCCAAGTTCGGGCTCGACCCGCGCCGC
GATGTCCAGGTCCTCGCGCCGATGCACCGGGGCCCGGCGGGCGCGGGCGCCCTCAACGGCCTCCTCCAGCAGGCCATCAC
ACCCGCCCGCCCGGACCTCCCCGAAAAGCGCTTCGGAGGCCGCGTCTTCCGCGTCGGCGACAAGGTCACCCAGATTCGCA
ACAACTACGAGAAGGGCAAGAACGGTGTCTTCAACGGCACCGTGGGCGTCGTCACCTCGCTGGACGCGGAGGAGCAGCGC
CTGACCGTGCTGACCGACGAGGACGAGGAGGTGCCGTACGACTTCGACGAACTCGACGAGCTGGCCCATGCGTACGCGGT
GACGATCCACCGTTCCCAGGGCAGCGAGTACCCGGCGGTGGTGATCCCGGTCACCACGGGCGCGTGGATGATGCTCCAGC
GCAACCTCCTCTACACGGCCGTCACCCGCGCGAAGAAGCTGGTCGTCCTGGTCGGCTCCCGCAAGGCGATAGGCCAGGCG
GTCCGCACGGTCTCCGCCGGACGGCGGTGCACGGCCCTGGACTTCCGCCTGTCCGGGGCACACCTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

Helix-hairpin-helix domain (HHH_5)

(94-143)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(578-643)

AAA domain (AAA_30)

(340-520)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-711)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.921

100

0.368