Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA33_RS27285 Genome accession   NZ_CP107791
Coordinates   6045917..6046567 (-) Length   216 a.a.
NCBI ID   WP_330246343.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00562     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6040917..6051567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA33_RS27265 (OHA33_27315) atpD 6041149..6042591 (+) 1443 WP_326605794.1 F0F1 ATP synthase subunit beta -
  OHA33_RS27270 (OHA33_27320) - 6042702..6043076 (+) 375 WP_030915989.1 F0F1 ATP synthase subunit epsilon -
  OHA33_RS27275 (OHA33_27325) - 6043214..6043660 (+) 447 WP_326605795.1 DUF2550 domain-containing protein -
  OHA33_RS27280 (OHA33_27330) - 6043877..6045748 (-) 1872 WP_330246342.1 glycoside hydrolase family 18 chitinase -
  OHA33_RS27285 (OHA33_27335) vraR 6045917..6046567 (-) 651 WP_330246343.1 response regulator transcription factor Regulator
  OHA33_RS27290 (OHA33_27340) - 6046564..6047760 (-) 1197 WP_330246344.1 histidine kinase -
  OHA33_RS27295 (OHA33_27345) - 6047912..6048472 (+) 561 WP_330246345.1 hypothetical protein -
  OHA33_RS27300 (OHA33_27350) - 6048503..6049075 (-) 573 WP_330246346.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  OHA33_RS27305 (OHA33_27355) - 6049378..6050226 (+) 849 WP_267001764.1 3-hydroxyacyl-CoA dehydrogenase family protein -
  OHA33_RS27310 (OHA33_27360) - 6050453..6050776 (+) 324 WP_030916001.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22853.46 Da        Isoelectric Point: 4.8265

>NTDB_id=646288 OHA33_RS27285 WP_330246343.1 6045917..6046567(-) (vraR) [Streptomyces sp. NBC_00562]
MTIRVLVAEDQSAVRAGLVLILGSAPDIEVVGEAADGEAAVHLARELRPDLVLMDVQMPRLDGVSATRQVVAEQLADVLV
LTTFDLDEYVFGALRAGAAGFLLKNTEAHELLEAVRTVARGEGLIAPAVTRRLIAEFAGTTPARPANAPDPAVLDALTRR
EREVLGCLGVGLSNAEIAVRLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGI

Nucleotide


Download         Length: 651 bp        

>NTDB_id=646288 OHA33_RS27285 WP_330246343.1 6045917..6046567(-) (vraR) [Streptomyces sp. NBC_00562]
ATGACGATCCGGGTACTGGTCGCGGAGGACCAGTCGGCCGTGCGCGCGGGGCTGGTGCTCATTCTGGGCAGCGCGCCCGA
CATCGAGGTCGTCGGGGAGGCGGCGGACGGCGAGGCGGCGGTGCATCTCGCCCGTGAACTGCGCCCGGATCTGGTGCTGA
TGGATGTCCAGATGCCCCGGCTGGACGGGGTGTCGGCGACGAGGCAGGTGGTGGCCGAGCAGTTGGCCGATGTGCTCGTG
CTGACGACGTTCGATCTGGACGAGTACGTCTTCGGGGCGCTGCGGGCGGGCGCGGCGGGCTTTCTGCTGAAGAACACCGA
GGCGCACGAACTGCTGGAAGCGGTACGGACGGTGGCGCGCGGCGAGGGCCTGATCGCCCCTGCCGTGACCCGCCGTCTGA
TCGCCGAGTTCGCCGGAACGACGCCGGCGCGGCCTGCGAACGCACCCGATCCGGCGGTTCTCGACGCCCTGACGCGGCGC
GAGCGCGAGGTACTCGGGTGTCTGGGCGTTGGGCTGTCGAACGCCGAGATCGCGGTGCGTCTTTCGATGGCGGAGGCGAC
GGTGAAGACGCACGTCAGCAGGTTGCTGGGGAAGCTGGAGCTGCGCAGCAGGGTCCAGGCAGCCGTACTGGCGCAGGAGT
TGGGGATCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-211)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.315

98.611

0.407
  degU Bacillus subtilis subsp. subtilis str. 168

38.914

100

0.398