Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   L0U97_RS08315 Genome accession   NZ_CP090890
Coordinates   1786123..1786851 (-) Length   242 a.a.
NCBI ID   WP_234856114.1    Uniprot ID   -
Organism   Acinetobacter junii strain WCO-9     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1781123..1791851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0U97_RS08285 - 1781573..1782013 (-) 441 WP_234856110.1 SRPBCC family protein -
  L0U97_RS08290 tadA 1782081..1782584 (-) 504 WP_234856111.1 tRNA adenosine(34) deaminase TadA -
  L0U97_RS08295 - 1782591..1783715 (-) 1125 WP_171053792.1 enoyl-CoA hydratase/isomerase family protein -
  L0U97_RS08300 ung 1783712..1784425 (-) 714 WP_004911491.1 uracil-DNA glycosylase -
  L0U97_RS08305 - 1784464..1785060 (-) 597 WP_234856112.1 6-pyruvoyl trahydropterin synthase family protein -
  L0U97_RS08310 gspK 1785167..1786126 (-) 960 WP_234856113.1 type II secretion system minor pseudopilin GspK -
  L0U97_RS08315 xcpW 1786123..1786851 (-) 729 WP_234856114.1 type II secretion system minor pseudopilin GspJ Machinery gene
  L0U97_RS08320 xcpV 1786848..1787201 (-) 354 WP_234857307.1 type II secretion system protein Machinery gene
  L0U97_RS08325 - 1787335..1787883 (-) 549 WP_234856115.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  L0U97_RS08330 - 1787896..1788504 (-) 609 WP_020899852.1 TetR/AcrR family transcriptional regulator -
  L0U97_RS08335 - 1788544..1789317 (-) 774 WP_130575798.1 TatD family hydrolase -
  L0U97_RS08340 - 1789341..1789685 (-) 345 WP_234856116.1 PilZ domain-containing protein -
  L0U97_RS08345 - 1789909..1790898 (-) 990 WP_234856117.1 DNA polymerase III subunit delta' -
  L0U97_RS08350 kdsB 1790900..1791661 (-) 762 WP_234856118.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27895.08 Da        Isoelectric Point: 9.3444

>NTDB_id=646196 L0U97_RS08315 WP_234856114.1 1786123..1786851(-) (xcpW) [Acinetobacter junii strain WCO-9]
MKIKNFVMGLGSKFNVVSECQQSSTKFYSSKKIKSNFGFTLVELLVAIAIFAVLSMLGWKVFDYLIKVKDRNAEHETHLF
ELQNAYQQFLKDSMQIIPLTANDGRQLQAAMVLNDRSFSFSKAGVSDPLKQGLSPYERIEYRYDVQQKKVYRLKYTNLNI
PNRVQPVSSTLLENVDQFRIVILNPQEISQWPENINDPNNVNELKKLPLGFKVQLTIASSDYEWIYSLLNANQLLVNQET
PQ

Nucleotide


Download         Length: 729 bp        

>NTDB_id=646196 L0U97_RS08315 WP_234856114.1 1786123..1786851(-) (xcpW) [Acinetobacter junii strain WCO-9]
ATGAAAATCAAGAATTTTGTAATGGGGTTGGGCTCCAAATTTAATGTTGTCTCAGAATGTCAGCAAAGTTCAACTAAATT
TTATTCGTCAAAAAAAATTAAGAGTAATTTTGGTTTTACTTTAGTTGAGTTACTTGTCGCGATTGCGATTTTTGCAGTAC
TTTCAATGTTGGGGTGGAAAGTTTTTGATTATCTCATCAAAGTGAAAGATAGAAATGCAGAACATGAAACACACTTATTT
GAATTACAGAATGCTTATCAGCAATTTCTAAAAGATAGTATGCAGATAATTCCATTGACTGCAAATGATGGGCGACAATT
ACAAGCAGCTATGGTTTTGAATGATCGAAGTTTTAGTTTTAGTAAGGCTGGAGTATCTGATCCATTGAAGCAAGGTCTTT
CACCATATGAGCGAATAGAATACAGATATGATGTACAACAAAAAAAAGTTTACCGTTTGAAATATACAAATTTAAATATT
CCAAATCGTGTGCAACCAGTATCAAGCACATTACTTGAAAATGTAGATCAATTTAGAATTGTGATTTTAAATCCACAAGA
AATTAGCCAATGGCCTGAAAATATTAATGATCCAAATAATGTAAATGAATTAAAGAAGTTACCATTAGGTTTTAAAGTTC
AATTGACGATTGCTAGCTCAGATTATGAGTGGATTTATAGTTTATTAAATGCCAATCAGTTATTGGTCAATCAGGAAACA
CCTCAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(34-57)

Type II secretion system (T2SS), protein J (T2SSJ)

(91-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

66.825

87.19

0.583