Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHO83_RS30010 Genome accession   NZ_CP107783
Coordinates   6684146..6685879 (-) Length   577 a.a.
NCBI ID   WP_330280809.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00569     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6679146..6690879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHO83_RS30000 (OHO83_30015) - 6680695..6682080 (+) 1386 WP_330279995.1 sigma-70 family RNA polymerase sigma factor -
  OHO83_RS30005 (OHO83_30020) rcrQ 6682221..6684146 (-) 1926 WP_266670298.1 ABC transporter ATP-binding protein Regulator
  OHO83_RS30010 (OHO83_30025) rcrP 6684146..6685879 (-) 1734 WP_330280809.1 ABC transporter ATP-binding protein Regulator
  OHO83_RS30015 (OHO83_30030) - 6686015..6687454 (-) 1440 WP_330279996.1 FGGY family carbohydrate kinase -
  OHO83_RS30020 (OHO83_30035) - 6687540..6687848 (-) 309 WP_266670294.1 YtxH domain-containing protein -
  OHO83_RS30040 (OHO83_30055) - 6688864..6689100 (+) 237 WP_330279997.1 hypothetical protein -
  OHO83_RS30045 (OHO83_30060) - 6689697..6690251 (+) 555 WP_266670290.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62495.60 Da        Isoelectric Point: 6.3206

>NTDB_id=646146 OHO83_RS30010 WP_330280809.1 6684146..6685879(-) (rcrP) [Streptomyces sp. NBC_00569]
MLIRLLRTYLGPYKKPIGVLVLLQFLQTCASLYLPTLNADIIDNGVVKGDTGYILTFGAIMIAITVVQMVCNIGAVFYGA
RTAAALGRDVRASVFDRVQSFSAREMGQFGAPSLITRTTNDVQQVQMLTLMTFTLMVSAPIMCVGGIVMALGQDVPLSGV
LLAVVPVLGISVSLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDGYEKDRFREANADLTEVSLGTGKLLAL
MFPIVMTVVNISSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLSTESSVVP
PASPVRELRSHGHLEIRDAGFRYPGAEEPVLKAIQVTARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVR
TIDPALLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKDFVKKLENGLDSPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGHETSEATVVIVAQRVSTIRDADRIVVLDEGHVVGTGTHHELMDGN
ATYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=646146 OHO83_RS30010 WP_330280809.1 6684146..6685879(-) (rcrP) [Streptomyces sp. NBC_00569]
GTGCTCATACGACTCCTGCGGACCTACCTCGGTCCGTACAAGAAACCCATCGGCGTGCTCGTACTGCTGCAGTTCCTGCA
GACCTGCGCGTCGCTCTATCTGCCCACCCTCAACGCGGACATCATTGACAACGGTGTCGTGAAGGGGGACACGGGCTACA
TCCTGACGTTCGGCGCCATCATGATCGCGATCACCGTGGTCCAGATGGTCTGCAACATCGGCGCCGTGTTCTACGGCGCC
CGCACCGCGGCCGCGCTCGGACGGGACGTCCGGGCCTCCGTGTTCGACCGCGTGCAGTCCTTCTCGGCGCGCGAGATGGG
CCAGTTCGGGGCGCCGTCCCTGATCACCCGCACGACGAACGACGTGCAGCAGGTCCAGATGCTCACGCTCATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGTGTCGGCGGCATCGTCATGGCGCTGGGCCAGGACGTGCCCCTGTCGGGCGTG
CTGCTCGCCGTGGTCCCGGTCCTCGGGATCAGCGTCAGTCTGATCGTGCGCCGCCTGCGGCCGCTGTTCCGCACCATGCA
GGTGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTGCGCGACG
GCTACGAGAAGGATCGCTTCCGCGAGGCCAACGCCGATCTGACCGAGGTCTCCCTCGGCACCGGCAAGCTCCTCGCGCTG
ATGTTCCCGATCGTCATGACCGTGGTGAACATCTCGTCGATCGCCGTCGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGCATGCAGATCGGCGCGCTCACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGAGCGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTCTCCACCGAGTCCAGCGTCGTGCCA
CCGGCCTCGCCGGTGCGGGAGCTGCGCAGCCACGGCCACCTGGAGATCCGGGACGCGGGCTTCCGCTACCCGGGCGCCGA
GGAACCCGTGCTCAAGGCCATCCAGGTCACCGCGCGCCCCGGCGAGACGACCGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCCACCCTTCTCGGCCTGGTGCCGCGCCTGTTCGACGCGACGGACGGCGAGGTTCTGGTGGACGGTGTCGACGTGCGC
ACCATCGACCCCGCGCTGCTCGCCAGGACCGTCGGGCTCGTGCCGCAGAAGCCGTACCTCTTCGCGGGCACGGTCGCGAC
GAATCTGCGGTACGGCAATCCGGACGCGACCGACGAAGAGCTGTGGCACGCCCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGAAGAAGCTGGAGAACGGGCTCGACTCCCCGATCTCGCAGGGCGGCACCAATGTGTCCGGCGGACAGCGCCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCCGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACGGA
CGCCGCGCTGCGGGCCGCGCTGGGTCACGAGACCTCCGAGGCGACCGTGGTGATCGTGGCCCAGCGGGTCTCCACCATCC
GCGACGCGGACCGCATCGTGGTCCTCGACGAGGGCCATGTCGTGGGCACGGGCACCCATCACGAGCTGATGGACGGCAAT
GCGACATACCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.821

97.054

0.386