Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OHA51_RS40200 Genome accession   NZ_CP107764
Coordinates   9001932..9002600 (+) Length   222 a.a.
NCBI ID   WP_330310337.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00589     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 8996932..9007600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA51_RS40175 (OHA51_40200) - 8997539..8998138 (-) 600 WP_330308299.1 nucleotidyltransferase family protein -
  OHA51_RS40180 (OHA51_40205) - 8998350..8998664 (+) 315 WP_330308300.1 DUF5955 family protein -
  OHA51_RS40185 (OHA51_40210) - 8998675..8999307 (-) 633 WP_327432883.1 response regulator transcription factor -
  OHA51_RS40190 (OHA51_40215) - 8999304..9000662 (-) 1359 WP_330308301.1 sensor histidine kinase -
  OHA51_RS40195 (OHA51_40220) - 9000863..9001900 (+) 1038 WP_330308302.1 ABC transporter permease -
  OHA51_RS40200 (OHA51_40225) amiE 9001932..9002600 (+) 669 WP_330310337.1 ABC transporter ATP-binding protein Regulator
  OHA51_RS40205 (OHA51_40230) - 9002668..9003471 (-) 804 WP_330308303.1 IclR family transcriptional regulator -
  OHA51_RS40210 (OHA51_40235) allB 9003771..9005093 (+) 1323 WP_330310338.1 allantoinase AllB -
  OHA51_RS40215 (OHA51_40240) alc 9005166..9006281 (+) 1116 WP_330308304.1 allantoicase -
  OHA51_RS40220 (OHA51_40245) - 9006439..9007188 (-) 750 WP_330308305.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23580.06 Da        Isoelectric Point: 7.4793

>NTDB_id=645809 OHA51_RS40200 WP_330310337.1 9001932..9002600(+) (amiE) [Streptomyces sp. NBC_00589]
MCLSLADVTLTYPDGDGRLTALDRVGLDVPAGTMTAIVGPSGSGKSSLLAVAATLVAPDRGRVLVGGTETGTLSPAERAV
LRRREIGIVFQQPNLLPSLTALEQLQVMGHLDGRRQVADRARELLAAVGLADLAHRRPHQLSGGQRQRVNIARALVNEPS
VLLVDEPTSALDHERGAAVLDLLARLTRERATATVLVTHDRAHLGEADAVREMADGRLRVLV

Nucleotide


Download         Length: 669 bp        

>NTDB_id=645809 OHA51_RS40200 WP_330310337.1 9001932..9002600(+) (amiE) [Streptomyces sp. NBC_00589]
TTGTGTCTGTCCCTGGCCGACGTCACCCTCACCTATCCGGACGGCGACGGACGGCTGACCGCCCTCGACCGGGTCGGCCT
CGACGTCCCGGCCGGGACCATGACGGCGATCGTCGGCCCGTCCGGCTCCGGCAAGTCCAGTCTGCTCGCGGTCGCCGCGA
CCCTGGTCGCGCCGGACCGCGGACGCGTCCTCGTCGGCGGTACGGAGACGGGGACGCTGAGCCCCGCCGAACGGGCCGTG
CTGCGGCGGCGTGAGATCGGCATCGTCTTCCAGCAGCCGAACCTGCTGCCCTCGCTGACGGCGCTGGAGCAGCTCCAGGT
GATGGGCCACCTGGACGGACGGCGCCAAGTGGCGGACCGGGCGAGGGAGTTGCTGGCGGCGGTGGGGCTCGCCGACCTGG
CGCACCGGCGTCCGCACCAGCTCTCCGGCGGTCAACGGCAGCGCGTGAACATCGCCCGCGCGCTGGTCAACGAACCGTCC
GTGCTCCTCGTCGACGAACCGACCAGCGCGCTCGACCACGAGCGGGGCGCGGCCGTCCTCGACCTGCTGGCCCGGCTCAC
CCGCGAGCGTGCCACGGCCACCGTCCTCGTCACGCACGACCGCGCCCACCTCGGGGAGGCGGACGCGGTACGGGAGATGG
CGGACGGGCGGCTTCGGGTACTCGTCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(22-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

34.764

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.764

100

0.365
  amiE Streptococcus salivarius strain HSISS4

34.764

100

0.365