Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG888_RS17270 Genome accession   NZ_CP107749
Coordinates   3766349..3768088 (+) Length   579 a.a.
NCBI ID   WP_327670268.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00622     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3761349..3773088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG888_RS17235 (OG888_17235) - 3761548..3762135 (+) 588 WP_371590779.1 hypothetical protein -
  OG888_RS17240 (OG888_17240) - 3762619..3763656 (+) 1038 WP_327670265.1 rod shape-determining protein -
  OG888_RS17260 (OG888_17260) - 3764366..3764677 (+) 312 WP_327670266.1 YtxH domain-containing protein -
  OG888_RS17265 (OG888_17265) - 3764746..3766176 (+) 1431 WP_327670267.1 FGGY family carbohydrate kinase -
  OG888_RS17270 (OG888_17270) rcrP 3766349..3768088 (+) 1740 WP_327670268.1 ABC transporter ATP-binding protein Regulator
  OG888_RS17275 (OG888_17275) rcrQ 3768088..3770013 (+) 1926 WP_327670269.1 ABC transporter ATP-binding protein Regulator
  OG888_RS17280 (OG888_17280) - 3770122..3771408 (-) 1287 WP_327670270.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 62677.72 Da        Isoelectric Point: 5.3801

>NTDB_id=645481 OG888_RS17270 WP_327670268.1 3766349..3768088(+) (rcrP) [Streptomyces sp. NBC_00622]
MLIKLLRTYLRPYKKPIGLLVLLQFLQTCASLYLPTLNADIIDNGVVNGDTGYILEFGALMLGVTVVQVVCNTGAVYFGA
RTAAAVGRDLRAGIFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLALMTFTLVASAPIMCVGGVVMALGLDVPLSGV
LLAVLPVMAIVLSLIIRKMRPLFRSMQVKLDTVNRVLREQITGNRVIRAFVRDDFEKDRFGAANRDLTDVSVATGRIMAL
MFPFVMTIVNVASIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMMPRAEVCAERIQEVLGTDSSVVP
PQPDASVRELRRHGHLELRGADFGYPGAEEPILRGIDITARPGETTAIIGSTGSGKSTLLGLVPRLYDTTAGTVYVDGED
VRGIDPALMAKTVGLVPQKPYLFSGTVATNLRYGNPDATDDELWHALEVAQAKGFVGKLEGGLDAPITQGGTNVSGGQRQ
RLAIARTLVQRPEIYLFDDSFSALDYATDAALRRALGEETAEATVVIVAQRVSTIRDADTIIVLDEGRVVGTGRHHELMA
DNETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=645481 OG888_RS17270 WP_327670268.1 3766349..3768088(+) (rcrP) [Streptomyces sp. NBC_00622]
GTGCTCATAAAACTTCTGCGGACCTATCTCCGTCCGTACAAGAAACCCATCGGGCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCTCGCTGTATCTGCCCACCCTGAACGCCGACATCATTGACAACGGTGTCGTGAACGGCGACACCGGCTACA
TCCTGGAGTTCGGCGCCCTGATGCTGGGCGTCACCGTCGTCCAGGTCGTCTGCAACACCGGCGCCGTCTACTTCGGCGCC
CGGACCGCCGCGGCGGTCGGCCGGGACCTGCGGGCGGGGATCTTCGACCGCGTGCAGTCCTTCTCGGCCCGCGAGGTCGG
CCAGTTCGGCGCCCCTTCGCTGATCACCCGCACCACGAACGATGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGGTGGCCTCGGCGCCGATCATGTGTGTCGGCGGCGTCGTCATGGCGCTCGGCCTGGACGTGCCGCTGTCGGGCGTG
CTGCTCGCCGTGCTGCCCGTCATGGCGATCGTCCTGTCGCTGATCATCCGCAAGATGCGGCCGTTGTTCCGGTCCATGCA
GGTCAAGCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGCGACG
ACTTCGAGAAGGACCGGTTCGGAGCCGCGAACCGGGACCTGACCGATGTGTCGGTCGCCACCGGCCGGATCATGGCACTG
ATGTTCCCGTTCGTGATGACGATCGTGAACGTCGCGTCCATCGCCGTGGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGCATGCAGATCGGTGACCTGACCGCATTCCTCGCGTATCTGATGCAGATCGTGATGAGCGTGATGATGGCCACGTTCA
TGTTCATGATGATGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAAGTGCTCGGCACCGATTCGAGTGTGGTGCCG
CCTCAGCCCGACGCGTCGGTGCGTGAACTGCGCCGCCACGGCCATCTGGAGCTGCGGGGCGCCGACTTCGGCTACCCGGG
CGCCGAGGAACCCATCCTGCGCGGCATCGACATCACGGCCCGCCCCGGCGAGACCACGGCCATCATCGGGTCGACCGGCA
GCGGCAAGTCGACACTCCTCGGCCTCGTGCCGCGGCTGTACGACACCACGGCCGGCACGGTCTACGTGGACGGCGAGGAC
GTCCGCGGGATCGACCCGGCACTGATGGCGAAGACGGTCGGGCTCGTGCCGCAGAAGCCGTACCTGTTCTCCGGCACCGT
CGCCACGAACCTGCGCTACGGCAATCCGGACGCCACCGACGACGAGCTGTGGCACGCGCTGGAAGTGGCGCAGGCCAAGG
GGTTCGTCGGCAAGCTGGAGGGCGGGCTCGACGCGCCCATCACGCAGGGCGGCACCAATGTCTCCGGCGGACAGCGCCAG
CGCCTCGCCATCGCGCGCACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGC
GACCGACGCGGCGCTGCGCCGGGCGCTCGGCGAGGAGACCGCCGAGGCGACCGTGGTGATCGTGGCCCAGCGGGTCTCGA
CGATCCGCGACGCCGACACGATCATCGTGCTCGACGAGGGCCGCGTCGTCGGCACCGGACGCCATCACGAGCTGATGGCC
GACAACGAGACGTACCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(353-500)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.32

97.237

0.392