Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHN35_RS29550 Genome accession   NZ_CP107748
Coordinates   6558348..6560273 (-) Length   641 a.a.
NCBI ID   WP_406310168.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00623     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6553348..6565273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN35_RS29535 (OHN35_29580) - 6553661..6554920 (+) 1260 WP_326630521.1 FAD-dependent oxidoreductase -
  OHN35_RS29540 (OHN35_29585) dnaG 6555071..6556978 (+) 1908 WP_406310167.1 DNA primase -
  OHN35_RS29545 (OHN35_29590) - 6557204..6558331 (+) 1128 WP_326630524.1 RNA polymerase sigma factor -
  OHN35_RS29550 (OHN35_29595) rcrQ 6558348..6560273 (-) 1926 WP_406310168.1 ABC transporter ATP-binding protein Regulator
  OHN35_RS29555 (OHN35_29600) rcrP 6560273..6562006 (-) 1734 WP_267005303.1 ABC transporter ATP-binding protein Regulator
  OHN35_RS29560 (OHN35_29605) - 6562177..6563622 (-) 1446 WP_326630529.1 FGGY family carbohydrate kinase -
  OHN35_RS29565 (OHN35_29610) - 6563683..6563988 (-) 306 WP_326608456.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 69171.48 Da        Isoelectric Point: 5.2028

>NTDB_id=645428 OHN35_RS29550 WP_406310168.1 6558348..6560273(-) (rcrQ) [Streptomyces sp. NBC_00623]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFATEKTSLYGMLAACVLSVGLSVVGPKILGRATDLVFAGVIGRRLPEGT
TKEQAVEGLRKTNSGLADLLSGVDFIPGHGIDFDAVGDVLLTALAVYVGAGLLMLVATRLSIRIINQVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLIMMFWISPLLALVALVTVPLSVVVATKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHSLVKVFGRQEESARDFAEQNDALYEASFRAQFNSGVMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQGPDARTGGRPAELLGSVSLEK
VSFRYEPDKPLIENLSLNVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVAQMSRDELRSGIGMVLQDTW
LFGGSIADNIAYGASREVTREEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLEAQGAYARLYAAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=645428 OHN35_RS29550 WP_406310168.1 6558348..6560273(-) (rcrQ) [Streptomyces sp. NBC_00623]
ATGGCCGGGCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGACCGGTCCATGGACTTCAAGGGGTCGTCGAAGCG
GCTGCTGAAGCGCTTCGCGACGGAGAAAACCTCCCTCTACGGGATGCTGGCGGCCTGCGTGCTGAGCGTCGGCCTCTCGG
TGGTGGGACCGAAGATCCTCGGCAGGGCGACCGACCTGGTGTTCGCCGGGGTCATCGGCCGGCGGCTGCCCGAGGGCACG
ACGAAGGAGCAGGCCGTCGAGGGCCTGCGCAAGACCAACAGCGGCCTGGCCGACCTGCTCTCCGGGGTCGACTTCATCCC
CGGCCACGGCATCGACTTCGATGCAGTGGGCGACGTACTGCTGACGGCGCTGGCGGTCTATGTCGGTGCCGGTCTGCTGA
TGCTGGTGGCGACCCGGCTGTCGATCCGGATCATCAACCAGGTCGTGTTCCAACTGCGCGAGGACATCCAGACGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACAT
CTCTCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCCCTGCTCACCATCGTCGGCGTGCTGATCATGATGTTCT
GGATCTCGCCGCTGCTGGCCCTGGTCGCGCTGGTGACGGTGCCGCTGTCGGTGGTCGTGGCGACGAAGGTCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGGTGACGGGAAAGCTCAACGCCCATATCGAGGAGATGTACACCGGGCACTC
CCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCGAGGGACTTCGCCGAGCAGAACGACGCACTGTACGAGGCGAGCT
TCCGGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGATAGCCGTC
GTCGGTGGGTTGCGGGTGGCGTCGGGTGCGCTGTCGATCGGTGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCCTCGGCCGAGCGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGGACCCGACGCCCGGACCGGTGGGCGCCCGGCAGAGCTGCTCGGCAGCGTCTCGCTGGAGAAG
GTGTCGTTCCGGTACGAGCCGGACAAGCCGCTCATCGAGAATCTGTCGCTGAACGTCGAGCCGGGCCACACGGTCGCGAT
CGTCGGCCCGACCGGCGCCGGCAAGACGACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCCGGATCG
CACTCGACGGCGTCGACGTGGCGCAGATGTCGCGCGACGAGCTGCGGTCGGGGATCGGCATGGTCCTGCAGGACACCTGG
CTGTTCGGCGGATCGATCGCGGACAACATCGCGTACGGCGCTTCGCGCGAGGTTACCCGGGAGGAGATCGAGGAGGCGGC
GAGGGCGGCCCACGCCGACCGCTTCATCCGTACCCTGCCGGACGGTTACGACACGGTGATCGACGACGAGGGCACCGGGG
TCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCG
ACGAGCTCCGTCGACACCCGTACCGAGGTACTGATCCAGAAGGCGATGGCCCGCCTCGCGCACGGCCGTACGAGCTTTGT
GATCGCGCACCGGCTCTCCACCATCCGGGATGCGGACGTCATCCTGGTGATGGAGAACGGTTCGATCGTCGAACAGGGCA
CGCACGACGAGCTGTTGGAGGCGCAGGGGGCGTACGCCCGGCTGTATGCGGCGCAGTTCGCGCAGGCGGTCGCCGAGGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(49-350)

ABC transporter (ABC_tran)

(413-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.867

93.916

0.374